RESEARCH ARTICLE
Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants
Haley Sanderson, Rodrigo Ortega-Polo, Rahat Zaheer, Noriko Goji, Kingsley K. Amoako, R. Stephen Brown, Anna Majury, Steven N. Liss and Tim A. McAllister
BMC Microbiology 2020 20:20
Published on: 24 January 2020
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Marine bacterial communities in the upper gulf of Thailand assessed by Illumina next-generation sequencing platform
Pongrawee Nimnoi and Neelawan Pongsilp
BMC Microbiology 2020 20:19
Published on: 23 January 2020
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An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25
Xiaoxia Yu, Zundan Ding, Yangyang Ji, Jintong Zhao, Xiaoqing Liu, Jian Tian, Ningfeng Wu and Yunliu Fan
BMC Microbiology 2020 20:18
Published on: 21 January 2020
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Low levels of HIV-1 drug resistance mutations in patients who achieved viral re-suppression without regimen switch: a retrospective study
Chika K. Onwuamah, Jonathan Okpokwu, Rosemary Audu, Godwin Imade, Seema T. Meloni, Azuka Okwuraiwe, Philippe Chebu, Adesola Z. Musa, Beth Chaplin, Ibrahim Dalhatu, Oche Agbaji, Jay Samuels, Oliver Ezechi, Mukhtar Ahmed, Georgina Odaibo, David O. Olaleye, Prosper Okonkwo, Babatunde Lawal Salako, Elliot Raizes, Chunfu Yang, Phyllis J. Kanki and Emmanuel O. Idigbe
BMC Microbiology 2020 20:17
Published on: 20 January 2020
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Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume
Otávio H. B. Pinto, Thais F. Silva, Carla S. Vizzotto, Renata H. Santana, Fabyano A. C. Lopes, Bruno S. Silva, Fabiano L. Thompson and Ricardo H. Kruger
BMC Microbiology 2020 20:13
Published on: 15 January 2020
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Biodegradation of endocrine disruptor Bisphenol A by Pseudomonas putida strain YC-AE1 isolated from polluted soil, Guangdong, China
Adel Eltoukhy, Yang Jia, Ruth Nahurira, M. A. Abo-Kadoum, Ibatsam Khokhar, Junhuan Wang and Yanchun Yan
BMC Microbiology 2020 20:11
Published on: 13 January 2020
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First identification and genotyping of Enterocytozoon bieneusi in humans in Myanmar
Yujuan Shen, Baiyan Gong, Xiaohua Liu, Yanchen Wu, Fengkun Yang, Jie Xu, Xiaofan Zhang, Jianping Cao and Aiqin Liu
BMC Microbiology 2020 20:10
Published on: 13 January 2020
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An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR
Shi-qi An, Miguel A. Valvano, Yan-hua Yu, Jeremy S. Webb and Guillermo Lopez Campos
BMC Microbiology 2020 20:1
Published on: 2 January 2020
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Long-term impact of fecal transplantation in healthy volunteers
Oleg V. Goloshchapov, Evgenii I. Olekhnovich, Sergey V. Sidorenko, Ivan S. Moiseev, Maxim A. Kucher, Dmitry E. Fedorov, Alexander V. Pavlenko, Alexander I. Manolov, Vladimir V. Gostev, Vladimir A. Veselovsky, Ksenia M. Klimina, Elena S. Kostryukova, Evgeny A. Bakin, Alexander N. Shvetcov, Elvira D. Gumbatova, Ruslana V. Klementeva, Alexander A. Shcherbakov, Margarita V. Gorchakova, Juan José Egozcue, Vera Pawlowsky-Glahn, Maria A. Suvorova, Alexey B. Chukhlovin, Vadim M. Govorun, Elena N. Ilina and Boris V. Afanasyev
BMC Microbiology 2019 19:312
Published on: 30 December 2019
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Gut bacteria of weevils developing on plant roots under extreme desert conditions
Fengqun Meng, Nitsan Bar-Shmuel, Reut Shavit, Adi Behar and Michal Segoli
BMC Microbiology 2019 19:311
Published on: 30 December 2019
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Primary progressive multiple sclerosis in a Russian cohort: relationship with gut bacterial diversity
Madina Kozhieva, Natalia Naumova, Tatiana Alikina, Alexey Boyko, Valentin Vlassov and Marsel R. Kabilov
BMC Microbiology 2019 19:309
Published on: 30 December 2019
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Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina®, and insights into its probiotic properties
Indu Khatri, Gaurav Sharma and Srikrishna Subramanian
BMC Microbiology 2019 19:307
Published on: 30 December 2019
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ShiF acts as an auxiliary factor of aerobactin secretion in meningitis Escherichia coli strain S88
Mathieu Genuini, Philippe Bidet, Jean-François Benoist, Dimitri Schlemmer, Chloé Lemaitre, André Birgy and Stéphane Bonacorsi
BMC Microbiology 2019 19:298
Published on: 17 December 2019
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Role of membrane compartment occupied by Can1 (MCC) and eisosome subdomains in plant pathogenicity of the necrotrophic fungus Alternaria brassicicola
Justine Colou, Guillaume Quang N’Guyen, Ophélie Dubreu, Kévin Fontaine, Anthony Kwasiborski, Franck Bastide, Florence Manero, Bruno Hamon, Sophie Aligon, Philippe Simoneau and Thomas Guillemette
BMC Microbiology 2019 19:295
Published on: 16 December 2019
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CtcS, a MarR family regulator, regulates chlortetracycline biosynthesis
Lingxin Kong, Jia Liu, Xiaoqing Zheng, Zixin Deng and Delin You
BMC Microbiology 2019 19:279
Published on: 10 December 2019
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Severe gut microbiota dysbiosis caused by malnourishment can be partly restored during 3 weeks of refeeding with fortified corn-soy-blend in a piglet model of childhood malnutrition
Bingfeng Leng, Maria B. Sørensen, Witold Kot, Thomas Thymann, Lukasz Krych and Dennis S. Nielsen
BMC Microbiology 2019 19:277
Published on: 10 December 2019
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The Moraxella catarrhalis phase-variable DNA methyltransferase ModM3 is an epigenetic regulator that affects bacterial survival in an in vivo model of otitis media
Luke V. Blakeway, Aimee Tan, Joseph A. Jurcisek, Lauren O. Bakaletz, John M. Atack, Ian R. Peak and Kate L. Seib
BMC Microbiology 2019 19:276
Published on: 9 December 2019
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Change of the duodenal mucosa-associated microbiota is related to intestinal metaplasia
Jian Gong, Lixiang Li, Xiuli Zuo and Yanqing Li
BMC Microbiology 2019 19:275
Published on: 9 December 2019
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Spatial structure of the microbiome in the gut of Pomacea canaliculata
Lan-Hua Li, Shan Lv, Yan Lu, Ding-Qi Bi, Yun-Hai Guo, Jia-Tong Wu, Zhi-Yuan Yue, Guang-Yao Mao, Zhong-Xin Guo, Yi Zhang and Yun-Feng Tang
BMC Microbiology 2019 19:273
Published on: 5 December 2019
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Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh
Shawon Ahmmed, Md. Abdullah-Al-Kamran Khan, Md. Mostavi Enan Eshik, Nusrat Jahan Punom, Abul Bashar Mir Md. Khademul Islam and Mohammad Shamsur Rahman
BMC Microbiology 2019 19:270
Published on: 3 December 2019
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Evaluation of a new Rapid Antimicrobial Susceptibility system for Gram-negative and Gram-positive bloodstream infections: speed and accuracy of Alfred 60AST
Vanesa Anton-Vazquez, Samuel Adjepong, Cristina Suarez and Timothy Planche
BMC Microbiology 2019 19:268
Published on: 29 November 2019
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Development of a multi-locus sequence typing system helps reveal the evolution of Cardinium hertigii, a reproductive manipulator symbiont of insects
Corinne M. Stouthamer, Suzanne E. Kelly, Evelyne Mann, Stephan Schmitz-Esser and Martha S. Hunter
BMC Microbiology 2019 19:266
Published on: 27 November 2019
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N-acetyltransferase AAC(3)-I confers gentamicin resistance to Phytophthora palmivora and Phytophthora infestans
Edouard Evangelisti, Temur Yunusov, Liron Shenhav and Sebastian Schornack
BMC Microbiology 2019 19:265
Published on: 27 November 2019
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Silicon application and related changes in soil bacterial community dynamics reduced ginseng black spot incidence in Panax ginseng in a short-term study
Meijia Li, Qiuxia Wang, Zhengbo Liu, Xiaoxi Pan and Yayu Zhang
BMC Microbiology 2019 19:263
Published on: 26 November 2019
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Isolation, characterization, and assessment of lactic acid bacteria toward their selection as poultry probiotics
Rine Christopher Reuben, Pravas Chandra Roy, Shovon Lal Sarkar, Rubayet-Ul Alam and Iqbal Kabir Jahid
BMC Microbiology 2019 19:253
Published on: 12 November 2019
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Antibiotics resistance and toxin profiles of Bacillus cereus-group isolates from fresh vegetables from German retail markets
Gregor Fiedler, Carmen Schneider, Etinosa O. Igbinosa, Jan Kabisch, Erik Brinks, Biserka Becker, Dominic A. Stoll, Gyu-Sung Cho, Melanie Huch and Charles M. A. P. Franz
BMC Microbiology 2019 19:250
Published on: 9 November 2019
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Phenotypic and genotypic characterization of clinical Staphylococcus aureus isolates from Kenya
Cecilia Kyany’a, Justin Nyasinga, Daniel Matano, Valerie Oundo, Simon Wacira, Willie Sang and Lillian Musila
BMC Microbiology 2019 19:245
Published on: 6 November 2019
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The role of Acinetobacter baumannii response regulator BfmR in pellicle formation and competitiveness via contact-dependent inhibition system
Renatas Krasauskas, Jūratė Skerniškytė, Julija Armalytė and Edita Sužiedėlienė
BMC Microbiology 2019 19:241
Published on: 5 November 2019
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Optimizing microbiome sequencing for small intestinal aspirates: validation of novel techniques through the REIMAGINE study
Gabriela Guimaraes Sousa Leite, Walter Morales, Stacy Weitsman, Shreya Celly, Gonzalo Parodi, Ruchi Mathur, Rashin Sedighi, Gillian M. Barlow, Ali Rezaie and Mark Pimentel
BMC Microbiology 2019 19:239
Published on: 1 November 2019
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Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches
Niclas Lampert, Aram Mikaelyan and Andreas Brune
BMC Microbiology 2019 19:238
Published on: 30 October 2019
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Nosocomial spread of OXA-232-producing Klebsiella pneumoniae ST15 in a teaching hospital, Shanghai, China
Xin Li, Wei Ma, Qin Qin, Shanrong Liu, Liyan Ye, Jiyong Yang and Boan Li
BMC Microbiology 2019 19:235
Published on: 28 October 2019
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Dynamic metabolic modelling of overproduced protein secretion in Streptomyces lividans using adaptive DFBA
Jósé R. Valverde, Sonia Gullón, Clara A. García-Herrero, Iván Campoy and Rafael P. Mellado
BMC Microbiology 2019 19:233
Published on: 26 October 2019
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Symbiotic bacteria motivate the foraging decision and promote fecundity and survival of Bactrocera dorsalis (Diptera: Tephritidae)
Mazarin Akami, Xue-Ming Ren, Xuewei Qi, Abdelaziz Mansour, Bingli Gao, Shuai Cao and Chang-Ying Niu
BMC Microbiology 2019 19:229
Published on: 22 October 2019
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High-throughput sequencing revealed differences of microbial community structure and diversity between healthy and diseased Caulerpa lentillifera
Zhourui Liang, Fuli Liu, Wenjun Wang, Pengyan Zhang, Xiutao Sun, Feijiu Wang and Heather Kell
BMC Microbiology 2019 19:225
Published on: 15 October 2019
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Variations of bacterial community during the decomposition of Microcystis under different temperatures and biomass
Shuren Wang, Dayong Zhao, Jin Zeng, Huimin Xu, Rui Huang, Congcong Jiao and Lin Guo
BMC Microbiology 2019 19:207
Published on: 4 September 2019
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The characteristics of gut microbiota and commensal Enterobacteriaceae isolates in tree shrew (Tupaia belangeri)
Wenpeng Gu, Pinfen Tong, Chenxiu Liu, Wenguang Wang, Caixia Lu, Yuanyuan Han, Xiaomei Sun, De Xuan Kuang, Na Li and Jiejie Dai
BMC Microbiology 2019 19:203
Published on: 2 September 2019
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Soil indigenous microbiome and plant genotypes cooperatively modify soybean rhizosphere microbiome assembly
Fang Liu, Tarek Hewezi, Sarah L. Lebeis, Vince Pantalone, Parwinder S. Grewal and Margaret E. Staton
BMC Microbiology 2019 19:201
Published on: 2 September 2019
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Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
Rahat Zaheer, Steven M. Lakin, Rodrigo Ortega Polo, Shaun R. Cook, Francis J. Larney, Paul S. Morley, Calvin W. Booker, Sherry J. Hannon, Gary Van Domselaar, Ron R. Read and Tim A. McAllister
BMC Microbiology 2019 19:197
Published on: 27 August 2019
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Enterocytozoon bieneusi genotypes in cats and dogs in Victoria, Australia
Yan Zhang, Anson V. Koehler, Tao Wang, David Cunliffe and Robin B. Gasser
BMC Microbiology 2019 19:183
Published on: 8 August 2019
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The conserved actinobacterial transcriptional regulator FtsR controls expression of ftsZ and further target genes and influences growth and cell division in Corynebacterium glutamicum
Kim Julia Kraxner, Tino Polen, Meike Baumgart and Michael Bott
BMC Microbiology 2019 19:179
Published on: 5 August 2019
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Molecular identification and antibacterial properties of an ericoid associated mycorrhizal fungus
O. R. Adeoyo, B. I. Pletschke and J. F. Dames
BMC Microbiology 2019 19:178
Published on: 5 August 2019
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rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing
Jean-Claude Ogier, Sylvie Pagès, Maxime Galan, Matthieu Barret and Sophie Gaudriault
BMC Microbiology 2019 19:171
Published on: 29 July 2019
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Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa
Stephanie L. Schnorr, Courtney A. Hofman, Shandukani R. Netshifhefhe, Frances D. Duncan, Tanvi P. Honap, Julie Lesnik and Cecil M. Lewis
BMC Microbiology 2019 19:164
Published on: 17 July 2019
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Transcriptional responses of Xanthomonas oryzae pv. oryzae to type III secretion system inhibitor ortho-coumaric acid
Susu Fan, Fang Tian, Liwei Fang, Ching-Hong Yang and Chenyang He
BMC Microbiology 2019 19:163
Published on: 15 July 2019
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Molecular characteristics of oxazolidinone resistance in enterococci from a multicenter study in China
Hongbin Chen, Xiaojuan Wang, Yuyao Yin, Shuguang Li, Yawei Zhang, Qi Wang and Hui Wang
BMC Microbiology 2019 19:162
Published on: 12 July 2019
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Deciphering microbial diversity associated with Fusarium wilt-diseased and disease-free banana rhizosphere soil
Dengbo Zhou, Tao Jing, Yufeng Chen, Fei Wang, Dengfeng Qi, Renjun Feng, Jianghui Xie and Huaping Li
BMC Microbiology 2019 19:161
Published on: 12 July 2019
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The effects of desynchronosis on the gut microbiota composition and physiological parameters of rats
Ksenia M. Klimina, Ekaterina G. Batotsyrenova, Roman A. Yunes, Elena H. Gilyaeva, Elena U. Poluektova, Taisia A. Kostrova, Anna V. Kudryavtseva, Maya V. Odorskaya, Vadim A. Kashuro, Artem S. Kasianov, Maksim B. Ivanov and Valery N. Danilenko
BMC Microbiology 2019 19:160
Published on: 12 July 2019
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Genomic insights into plant growth promoting rhizobia capable of enhancing soybean germination under drought stress
Nicholas O. Igiehon, Olubukola O. Babalola and Bukola R. Aremu
BMC Microbiology 2019 19:159
Published on: 11 July 2019
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Determining antimicrobial susceptibility in Salmonella enterica serovar Typhimurium through whole genome sequencing: a comparison against multiple phenotypic susceptibility testing methods
Nana Mensah, Yue Tang, Shaun Cawthraw, Manal AbuOun, Jackie Fenner, Nicholas R. Thomson, Alison E. Mather and Liljana Petrovska-Holmes
BMC Microbiology 2019 19:148
Published on: 2 July 2019
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Divergent methylation of CRISPR repeats and casgenes in a subtype I-D CRISPR-Cas-system
Ingeborg Scholz, Steffen C. Lott, Juliane Behler, Katrin Gärtner, Martin Hagemann and Wolfgang R. Hess
BMC Microbiology 2019 19:147
Published on: 1 July 2019
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Decoding the proteomic changes involved in the biofilm formation of Enterococcus faecalis SK460 to elucidate potential biofilm determinants
Karthika Suryaletha, Lekshmi Narendrakumar, Joby John, Megha Periyappilly Radhakrishnan, Sanil George and Sabu Thomas
BMC Microbiology 2019 19:146
Published on: 28 June 2019
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Assessment of the impact of different fecal storage protocols on the microbiota diversity and composition: a pilot study
Shirin Moossavi, Phillip A. Engen, Reza Ghanbari, Stefan J. Green, Ankur Naqib, Faraz Bishehsari, Shahin Merat, Hossein Poustchi, Ali Keshavarzian and Reza Malekzadeh
BMC Microbiology 2019 19:145
Published on: 28 June 2019
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Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential
Apirak Wiseschart, Wuttichai Mhuantong, Sithichoke Tangphatsornruang, Duriya Chantasingh and Kusol Pootanakit
BMC Microbiology 2019 19:144
Published on: 27 June 2019
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Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
Vincent Somerville, Stefanie Lutz, Michael Schmid, Daniel Frei, Aline Moser, Stefan Irmler, Jürg E. Frey and Christian H. Ahrens
BMC Microbiology 2019 19:143
Published on: 25 June 2019
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Bacterial microbiomes of Ixodes scapularis ticks collected from Massachusetts and Texas, USA
Santosh Thapa, Yan Zhang and Michael S. Allen
BMC Microbiology 2019 19:138
Published on: 24 June 2019
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Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice
Byron J Smith, Richard A Miller, Aaron C Ericsson, David C Harrison, Randy Strong and Thomas M Schmidt
BMC Microbiology 2019 19:130
Published on: 13 June 2019
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Heterogeneous development of methanogens and the correlation with bacteria in the rumen and cecum of sika deer (Cervus nippon) during early life suggest different ecology relevance
Zhipeng Li, Xiaoxu Wang, Ting Zhang, Huazhe Si, Chao Xu, André-Denis G. Wright and Guangyu Li
BMC Microbiology 2019 19:129
Published on: 11 June 2019
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Unveiling the partners of the DRBD2-mRNP complex, an RBP in Trypanosoma cruzi and ortholog to the yeast SR-protein Gbp2
Helisa Helena Wippel, Juliane Soldi Malgarin, Alexandre Haruo Inoue, Felipe da Veiga Leprevost, Paulo Costa Carvalho, Samuel Goldenberg and Lysangela Ronalte Alves
BMC Microbiology 2019 19:128
Published on: 11 June 2019
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Genomic analysis of methicillin-resistant Staphylococcus aureus strain SO-1977 from Sudan
Mohamed S. Ali, Nurulfiza M. Isa, Faisal M. Abedelrhman, Tahani B. Alyas, Sara E. Mohammed, Abdallah E. Ahmed, Zainab S. A. Ahmed, Nyok-Sean Lau, Mohamed I. Garbi, Abdullah Al-Ashraf Amirul, Almeen O. Seed, Rihab A. Omer and Sofia B. Mohamed
BMC Microbiology 2019 19:126
Published on: 11 June 2019
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Exploring the tissue tropism of pseudorabies virus based on miRNA level analysis
Yi Fan, Ling Zhu, Xiangang Sun, Wenting Lyu, Lei Xu, Yue Yin, Jun Zhao, Jianbo Huang, Yichao Den, Zhiyi Jiang, Shiyao Xu, Xiyu Mao and Zhiwen Xu
BMC Microbiology 2019 19:125
Published on: 11 June 2019
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Transcriptome analysis of responses to bluetongue virus infection in Aedes albopictus cells
Junzheng Du, Shandian Gao, Zhancheng Tian, Yanni Guo, Di Kang, Shanshan Xing, Guorui Zhang, Guangyuan Liu, Jianxun Luo, Huiyun Chang and Hong Yin
BMC Microbiology 2019 19:121
Published on: 10 June 2019
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The prominent alteration in transcriptome and metabolome of Mycobacterium bovis BCG str. Tokyo 172 induced by vitamin B1
Ningning Song, Zhaoli Li, Ziyin Cui, Liping Chen, Yingying Cui, Guanghui Dang, Zhe Li, He Li and Siguo Liu
BMC Microbiology 2019 19:104
Published on: 22 May 2019
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Biological and transcriptomic studies reveal hfq is required for swimming, biofilm formation and stress response in Xanthomonas axonpodis pv. citri
Xuelu Liu, Yuping Yan, Haodi Wu, Changyong Zhou and Xuefeng Wang
BMC Microbiology 2019 19:103
Published on: 22 May 2019
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Trichoderma lixii (IIIM-B4), an endophyte of Bacopa monnieri L. producing peptaibols
Meenu Katoch, Deepika Singh, Kamal K. Kapoor and R. A. Vishwakarma
BMC Microbiology 2019 19:98
Published on: 16 May 2019
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Statistical evaluation of diet-microbe associations
Xiang Zhang, Max Nieuwdorp, Albert K. Groen and Aeiko H. Zwinderman
BMC Microbiology 2019 19:90
Published on: 9 May 2019
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Plasmids of Shigella flexneri serotype 1c strain Y394 provide advantages to bacteria in the host
Pawan Parajuli, Munazza I. Rajput and Naresh K. VermaBMC Microbiology 2019 19:86
Published on: 29 April 2019
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Biofilm mediated synergistic degradation of hexadecane by a naturally formed community comprising Aspergillus flavus complex and Bacillus cereus group
Madushika Perera, Dilrukshi Wijayarathna, Sulochana Wijesundera, Manoj Chinthaka, Gamini Seneviratne and Sharmila Jayasena
BMC Microbiology 2019 19:84
Published on: 29 April 2019
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Diversity and community of methanogens in the large intestine of finishing pigs
Jiandui Mi, Haiyan Peng, Yinbao Wu, Yan Wang and Xindi Liao
BMC Microbiology 2019 19:83
Published on: 29 April 2019
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Characterization of an NDM-5 carbapenemase-producing Escherichia coli ST156 isolate from a poultry farm in Zhejiang, China
Biao Tan, Jiang Chang, Liujie Cao, Qixia Luo, Hao Xu, Wentao Lyu, Mingrong Qian, Xiaofeng Ji, Qiaoyan Zhang, Xiaodong Xia and Hua Yang
BMC Microbiology 2019 19:82
Published on: 25 April 2019
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gyrA and parC mutations in fluoroquinolone-resistant Neisseria gonorrhoeae isolates from Kenya
Mary Wandia Kivata, Margaret Mbuchi, Fredrick Lunyagi Eyase, Wallace Dimbuson Bulimo, Cecilia Katunge Kyanya, Valerie Oundo, Simon Wachira Muriithi, Ben Andagalu, Wilton Mwema Mbinda, Olusegun O. Soge, R. Scott McClelland, Willy Sang and James D. Mancuso
BMC Microbiology 2019 19:76
Published on: 8 April 2019
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Next-generation sequencing for hypothesis-free genomic detection of invasive tropical infections in poly-microbially contaminated, formalin-fixed, paraffin-embedded tissue samples – a proof-of-principle assessment
Hagen Frickmann, Carsten Künne, Ralf Matthias Hagen, Andreas Podbielski, Jana Normann, Sven Poppert, Mario Looso and Bernd Kreikemeyer
BMC Microbiology 2019 19:75
Published on: 8 April 2019
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Efficacy of bacteriophage treatment against carbapenem-resistant Acinetobacter baumannii in Galleria mellonella larvae and a mouse model of acute pneumonia
Jongsoo Jeon, Jong-Hwan Park and Dongeun Yong
BMC Microbiology 2019 19:70
Published on: 2 April 2019
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A genomic analysis of Mycobacterium immunogenum strain CD11_6 and its potential role in the activation of T cells against Mycobacterium tuberculosis
Gurpreet Kaur, Atul Munish Chander, Gurwinder Kaur, Sudeep Kumar Maurya, Sajid Nadeem, Rakesh Kochhar, Sanjay Kumar Bhadada, Javed N. Agrewala and Shanmugam Mayilraj
BMC Microbiology 2019 19:64
Published on: 20 March 2019
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Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia
J. J. van Aartsen, C. E. Moore, C. M. Parry, P. Turner, N. Phot, S. Mao, K. Suy, T. Davies, A. Giess, A. E. Sheppard, T. E. A. Peto, N. P. J. Day, D. W. Crook, A. S. Walker and N. Stoesser
BMC Microbiology 2019 19:59
Published on: 12 March 2019
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Comparative gene expression analysis of planktonic Porphyromonas gingivalis ATCC 33277 in the presence of a growing biofilm versus planktonic cells
María C. Sánchez, Patricia Romero-Lastra, Honorato Ribeiro-Vidal, Arancha Llama-Palacios, Elena Figuero, David Herrera and Mariano Sanz
BMC Microbiology 2019 19:58
Published on: 12 March 2019
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Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice
Pedro J. Torres, Danalea V. Skarra, Bryan S. Ho, Lillian Sau, Arya R. Anvar, Scott T. Kelley and Varykina G. Thackray
BMC Microbiology 2019 19:57
Published on: 12 March 2019
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Paeniclostridium sordellii and Clostridioides difficile encode similar and clinically relevant tetracycline resistance loci in diverse genomic locations
Callum J. Vidor, Dieter Bulach, Milena Awad and Dena Lyras
BMC Microbiology 2019 19:53
Published on: 4 March 2019
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Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue
Christopher J. Stewart, Roxana Fatemizadeh, Pamela Parsons, Christopher A. Lamb, Deborah A. Shady, Joseph F. Petrosino and Amy B. Hair
BMC Microbiology 2019 19:52
Published on: 4 March 2019
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Mangrove derived Streptomyces sp. MUM265 as a potential source of antioxidant and anticolon-cancer agents
Loh Teng-Hern Tan, Kok-Gan Chan, Priyia Pusparajah, Wai-Fong Yin, Tahir Mehmood Khan, Learn-Han Lee and Bey-Hing Goh
BMC Microbiology 2019 19:38
Published on: 13 February 2019
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Lactobacillus mucosae DPC 6426 as a bile-modifying and immunomodulatory microbe
Paul M. Ryan, Ellen H. Stolte, Lis E. E. London, Jerry M. Wells, Sarah L. Long, Susan A. Joyce, Cormac G. M. Gahan, Gerald F. Fitzgerald, R. Paul Ross, Noel M. Caplice and Catherine Stanton
BMC Microbiology 2019 19:33
Published on: 8 February 2019
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Phylogenetic relationship of Ornithobacterium rhinotracheale isolated from poultry and diverse avian hosts based on 16S rRNA and rpoB gene analyses
Inês M. B. Veiga, Dörte Lüschow, Stefanie Gutzer, Hafez M. Hafez and Kristin Mühldorfe
BMC Microbiology 2019 19:31
Published on: 6 February 2019
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NGS-based phylogeny of diphtheria-related pathogenicity factors in different Corynebacterium spp. implies species-specific virulence transmission
Alexandra Dangel, Anja Berger, Regina Konrad and Andreas Sing
BMC Microbiology 2019 19:28
Published on: 1 February 2019
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Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France
Guillaume Geslain, André Birgy, Sandrine Adiba, Mélanie Magnan, Céline Courroux, Corinne Levy, Robert Cohen, Philippe Bidet and Stéphane Bonacorsi
BMC Microbiology 2019 19:17
Published on: 17 January 2019
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Comparative study of vulva and abdominal skin microbiota of healthy females with high and average BMI
Rebecca Vongsa, Doug Hoffman, Kristin Shepard and David Koenig
BMC Microbiology 2019 19:16
Published on: 17 January 2019
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Characterization and complete genome analysis of the surfactin-producing, plant-protecting bacterium Bacillus velezensis 9D-6
Elliot Nicholas Grady, Jacqueline MacDonald, Margaret T. Ho, Brian Weselowski, Tim McDowell, Ori Solomon, Justin Renaud and Ze-Chun Yuan
BMC Microbiology 2019 19:5
Published on: 8 January 2019
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Functional analysis of Leifsonia xyli subsp. xyli membrane protein gene Lxx18460 (anti-sigma
Kai Zhu, Min Shao, Dan Zhou,Yong-Xiu Xing, Li-Tao Yang and Yang-Rui Li
BMC Microbiology 2019 19:2
Published on: 7 January 2019
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RESEARCH ARTICLE
Putrescine biosynthesis and export genes are essential for normal growth of avian pathogenic Escherichia coli
Priscila R. Guerra, Ana Herrero-Fresno, Victor Ladero, Begoña Redruello, Teresa Pires dos Santos, Malene R. Spiegelhauer, Lotte Jelsbak and John Elmerdahl Olsen
BMC Microbiology 2018 18:226
Published on: 27 December 2018
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RESEARCH ARTICLE
Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study
Martin Steen Mortensen†, Betina Hebbelstrup Jensen†, Jeanne Williams, Asker Daniel Brejnrod, Lee O’Brien Andersen, Dennis Röser, Bente Utoft Andreassen, Andreas Munk Petersen, Christen Rune Stensvold, Søren Johannes Sørensen and Karen Angeliki Krogfelt
BMC Microbiology 2018 18:223
Published on: 22 December 2018
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Genomic characterization of Listeria monocytogenes isolates reveals that their persistence in a pig slaughterhouse is linked to the presence of benzalkonium chloride resistance genesTamazight Cherifi, Catherine Carrillo, Dominic Lambert, Ilhem Miniaï, Sylvain Quessy, Guillaume Larivière-Gauthier, Burton Blais, and Philippe Fravalo
BMC Microbiology 2018 18:220
Published on: 20 December 2018
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RESEARCH ARTICLE
Evaluating the profound effect of gut microbiome on host appetite in pigs
Hui Yang†, Ming Yang†, Shaoming Fang, Xiaochang Huang, Maozhang He, Shanlin Ke, Jun Gao, Jinyuan Wu, Yunyan Zhou, Hao Fu, Congying Chen and Lusheng Huang
BMC Microbiology 2018 18:215
Published on: 14 December 2018
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RESEARCH ARTICLE
Profiling grapevine trunk pathogens in planta: a case for community-targeted DNA metabarcoding
Abraham Morales-Cruz, Rosa Figueroa-Balderas, Jadran F. García, Eric Tran, Philippe E. Rolshausen, Kendra Baumgartner and Dario Cantu
BMC Microbiology 2018 18:214
Published on: 14 December 2018
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RESEARCH ARTICLE
Rumen methanogen and protozoal communities of Tibetan sheep and Gansu Alpine Finewool sheep grazing on the Qinghai–Tibetan Plateau, China
Jinqiang Huang and Yongjuan Li
BMC Microbiology 2018 18:212
Published on: 13 December 2018
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RESEARCH ARTICLE
Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study
Corrie M. Whisner, Juan Maldonado, Brandon Dente, Rosa Krajmalnik-Brown and Meg Bruening
BMC Microbiology 2018 18:210
Published on: 12 December 2018
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RESEARCH ARTICLE
Long-term colonization exceeding six years from early infancy of Bifidobacterium longum subsp. longum in human gut
Kaihei Oki, Takuya Akiyama, Kazunori Matsuda, Agata Gawad, Hiroshi Makino, Eiji Ishikawa, Kenji Oishi, Akira Kushiro and Junji Fujimoto
BMC Microbiology 2018 18:209
Published on: 12 December 2018
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RESEARCH ARTICLE
USA300 Staphylococcus aureus persists on multiple body sites following an infection
Timothy D. Read, Robert A. PetitIII, Zachary Yin, Tuyaa Montgomery, Moira C. McNulty and Michael Z. David
BMC Microbiology 2018 18:206
Published on: 5 December 2018
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Molecular characterization of Mannheimia haemolytica isolates associated with pneumonic cases of sheep in selected areas of Central Ethiopia
Abinet Legesse, Takele Abayneh, Gezahegne Mamo, Esayas Gelaye, Liyuwork Tesfaw, Martha Yami and Alebachew Belay
BMC Microbiology 2018 18:205
Published on: 5 December 2018
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RESEARCH ARTICLE
Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages
Giuseppe Gallo, Luana Presta, Elena Perrin, Michele Gallo, Davide Marchetto, Anna Maria Puglia, Renato Fani and Franco Baldi
BMC Microbiology 2018 18:198
Published on: 27 November 2018
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RESEARCH ARTICLE
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Alison Vrbanac, Angelica M. Riestra, Alison Coady, Rob Knight, Victor Nizet and Kathryn A. Patras
BMC Microbiology 2018 18:197
Published on: 26 November 2018
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RESEARCH ARTICLE
Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains
Nitin K. Singh, Daniela Bezdan, Aleksandra Checinska Sielaff, Kevin Wheeler, Christopher E. Mason and Kasthuri Venkateswaran
BMC Microbiology 2018 18:175
Published on: 23 November 2018
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RESEARCH ARTICLE
A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms
Stefanos Banos, Guillaume Lentendu, Anna Kopf, Tesfaye Wubet, Frank Oliver Glöckner and Marlis Reich
BMC Microbiology 2018 18:190
Published on: 20 November 2018
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RESEARCH ARTICLE
Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing
Joelle K. Salazar, Christina K. Carstens, Padmini Ramachandran, Arlette G. Shazer, Sartaj S. Narula, Elizabeth Reed, Andrea Ottesen and Kristin M. Schill
BMC Microbiology 2018 18:189
Published on: 19 November 2018
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RESEARCH ARTICLE
Taxonomic classification for microbiome analysis, which correlates well with the metabolite milieu of the gut
Yoshihisa Wakita, Yumi Shimomura, Yusuke Kitada, Hiroyuki Yamamoto, Yoshiaki Ohashi and Mitsuharu Matsumoto
BMC Microbiology 2018 18:188
Published on: 16 November 2018
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Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial
Erica L. Plummer, Dieter M. Bulach, Gerald L. Murray, Susan E. Jacobs, Sepehr N. Tabrizi, Suzanne M. Garland and for the ProPrems Study Group
BMC Microbiology 2018 18:184
Published on: 13 November 2018
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RESEARCH ARTICLE
Characterization of Streptococcus pluranimalium from a cattle with mastitis by whole genome sequencing and functional validation
Yushan Pan, Haoran An, Tong Fu, Shiyu Zhao, Chengwang Zhang, Genhui Xiao, Jingren Zhang, Xinfang Zhao and Gongzheng Hu
BMC Microbiology 2018 18:182
Published on: 12 November 2018
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RESEARCH ARTICLE
Correlating enzyme annotations with a large set of microbial growth temperatures reveals metabolic adaptations to growth at diverse temperatures
Martin K. M. Engqvist
BMC Microbiology 2018 18:177
Published on: 6 November 2018
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RESEARCH ARTICLE
Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence
Dai Zhang, Jia-Yu He, Parham Haddadi, Jie-Hua ZhuEmail, Zhi-Hui YangEmail and Lisong Ma
BMC Microbiology 2018 18:176
Published on: 6 November 2018
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RESEARCH ARTICLE
Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation
Shogo Nishihata, Takahiko Kondo, Kosei Tanaka, Shu Ishikawa, Shinji Takenaka, Choong-Min Kang and Ken-ichi Yoshida
BMC Microbiology 2018 18:156
Published on: 24 October 2018
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RESEARCH ARTICLE
In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans
Lars Langhanki, Petya Berger, Janina Treffon, Francesco Catania, Barbara C. Kahl and Alexander Mellmann
BMC Microbiology 2018 18:152
Published on: 22 October 2018
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RESEARCH ARTICLE
Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations
Ajoy Roy, Pinaki Sar, Jayeeta Sarkar, Avishek Dutta, Poulomi Sarkar, Abhishek Gupta, Balaram Mohapatra, Siddhartha Pal and Sufia K Kazy
BMC Microbiology 2018 18:151
Published on: 22 October 2018
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RESEARCH ARTICLE
Insights into the impact of flhF inactivation on Campylobacter jejuni colonization of chick and mice gut
Fangzhe Ren, Xiaofei Li, Haiyan Tang, Qidong Jiang, Xi Yun, Lin Fang, Pingyu Huang, Yuanyue Tang, Qiuchun Li, Jinlin Huang and Xin-an Jiao
BMC Microbiology 2018 18:149
Published on: 22 October 2018
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RESEARCH ARTICLE
Dickeya zeae strains isolated from rice, banana and clivia rot plants show great virulence differentials
Ming Hu, Jieling Li, Ruiting Chen, Wenjun Li, Luwen Feng, Lei Shi, Yang Xue, Xiaoyin Feng, Lianhui Zhang and Jianuan Zhou
BMC Microbiology 2018 18:136
Published on: 18 October 2018
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RESEARCH ARTICLE
Mass spectrometry-based identification and whole-genome characterisation of the first pteropine orthoreovirus isolated from monkey faeces in Thailand
Nathamon Kosoltanapiwat, Onrapak Reamtong, Tamaki Okabayashi, Sumate Ampawong, Amporn Rungruengkitkun, Tipparat Thiangtrongjit, Narin Thippornchai, Pornsawan Leaungwutiwong, Aongart Mahittikorn, Hirotake Mori, Thanada Yoohanngoa and Prechaya Yamwong
BMC Microbiology 2018 18:135
Published on: 17 October 2018
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RESEARCH ARTICLE
Temperature-controlled thermophilic bacterial communities in hot springs of western Sichuan, China
Jie Tang, Yuanmei Liang, Dong Jiang, Liheng Li, Yifan Luo, Md. Mahfuzur R. Shah and Maurycy Daroch
BMC Microbiology 2018 18:134
Published on: 17 October 2018
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RESEARCH ARTICLE
Biocontrol traits of Bacillus licheniformis GL174,a culturable endophyte of Vitis vinifera cv. GleraSebastiano Nigris, Enrico Baldan, Alessandra Tondello, Filippo Zanella, Nicola Vitulo, Gabriella Favaro, Valerio Guidolin, Nicola Bordin, Andrea Telatin, Elisabetta Barizza, Stefania Marcato, Michela Zottini, Andrea Squartini, Giorgio Valle and Barbara Baldan
BMC Microbiology 2018 18:133
Published on: 16 October 2018
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RESEARCH ARTICLE
The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala
Xiaoyun Wang, Qiao Gao, Wanqiang Wang, Xiaoping Wang, Chaoliang Lei and Fen Zhu
BMC Microbiology 2018 18:131
Published on: 11 October 2018
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RESEARCH ARTICLE
Escovopsioides as a fungal antagonist of the fungus cultivated by leafcutter ants
Julio Flavio Osti and Andre Rodrigues
BMC Microbiology 2018 18:130
Published on: 10 October 2018
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RESEARCH ARTICLE
The palatine tonsil bacteriome, but not the mycobiome, is altered in HIV infection
Yuto Fukui, Kotaro Aoki, Yoshikazu Ishii and Kazuhiro Tateda
BMC Microbiology 2018 18:127
Published on: 5 October 2018
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RESEARCH ARTICLE
Estimating bacteria diversity in different organs of nine species of mosquito by next generation sequencing
M V Mancini, C Damiani, A Accoti, M Tallarita, E Nunzi, A Cappelli, J Bozic, R Catanzani, P Rossi, M Valzano, A Serrao, I Ricci, R Spaccapelo, G Favia
BMC Microbiology 2018 18:126
Published on: 4 October 2018
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RESEARCH ARTICLE
Air and waterborne microbiome of a pharmaceutical plant provide insights on spatiotemporal variations and community resilience after disturbance
Filippo Pacchioni, Alfonso Esposito, Elisabetta Giacobazzi, Clotilde Bettua, Paolo Struffi and Olivier Jousson
BMC Microbiology 2018 18:124
Published on: 3 October 2018
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RESEARCH ARTICLE
A metagenome-wide association study of gut microbiota in asthma in UK adults
Qi Wang, Fei Li, Bishan Liang, Yuhu Liang, Sijie Chen, Xiaodong Mo, Yanmei Ju, Hui Zhao, Huijue Jia, Timothy D. Spector, Hailiang Xie and Ruijin Guo
BMC Microbiology 2018 18:114
Published on: 12 September 2018
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RESEARCH ARTICLE
Genotyping and phylogenetic placement of Bacillus anthracis isolates from Finland, a country with rare anthrax cases
Taru Lienemann, Wolfgang Beyer, Kirsti Pelkola, Heidi Rossow, Alexandra Rehn, Markus Antwerpen and Gregor Grass
BMC Microbiology 2018 18:102
Published on: 3 September 2018
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RESEARCH ARTICLE
A decay effect of the growth rate associated with genome reduction in Escherichia coli
Kouhei Tsuchiya, Yang-Yang Cao, Masaomi Kurokawa, Kazuha Ashino, Tetsuya Yomo and Bei-Wen Ying
BMC Microbiology 2018 18:101
Published on: 3 September 2018
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RESEARCH ARTICLE
The variation profile of intestinal microbiota in blunt snout bream (Megalobrama amblycephala) during feeding habit transition
Jin Wei, Xianwu Guo, Han Liu, Yuanyuan Chen and Weimin Wang
BMC Microbiology 2018 18:99
Published on: 3 September 2018
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