Table 3 MaAsLin2 analysis of microbiological features associated with SARS-CoV-2 infection in PLWH

 < d8_significant_results

feature

coefficient

p value

q value

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Agathobacter

-3.529475

0.014136

0.232761

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Peptostreptococcaceae.f__Peptostreptococcaceae.unassigned

-3.514981

0.001127

0.180114

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Anaerostipes

-3.238904

0.006077

0.198141

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Fusicatenibacter

-3.012233

0.00199

0.180114

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__.Ruminococcus..gauvreauii.group

-2.365259

0.009122

0.198141

 k__Bacteria.p__Firmicutes.c__Negativicutes.o__Selenomonadales.f__Veillonellaceae.g__Allisonella

-2.218109

0.007567

0.198141

 k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Xanthomonadales.f__Xanthomonadaceae.g__Lysobacter

-2.012181

0.007466

0.198141

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Lachnospiraceae.FCS020.group

-1.921816

0.008338

0.198141

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Peptostreptococcaceae.g__Peptostreptococcus

0.881346

0.006571

0.198141

 k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales.f__Staphylococcaceae.g__Staphylococcus

1.153639

0.006334

0.198141

 k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Betaproteobacteriales.f__Burkholderiaceae.g__Ralstonia

1.225529

0.009374

0.198141

 k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Betaproteobacteriales.f__Burkholderiaceae.g__Burkholderia.Caballeronia.Paraburkholderia

1.342507

0.007972

0.198141

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Eubacteriaceae.g__Anaerofustis

1.467882

0.013115

0.232761

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Ruminococcaceae.g__Ruminococcus.2

1.991821

0.009673

0.198141

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Ruminococcaceae.g__GCA.900066225

2.081854

0.004563

0.198141

 k__Bacteria.p__Actinobacteria.c__Coriobacteriia.o__Coriobacteriales.f__Eggerthellaceae.g__Eggerthella

2.237567

0.009852

0.198141

 k__Bacteria.p__Patescibacteria.c__Saccharimonadia.o__Saccharimonadales.f__Saccharimonadaceae.g__TM7.phylum.sp..oral.clone.DR034

2.85835

0.003307

0.198141

d8-14_significant_results

feature

coefficient

p value

q value

 k__Bacteria.p__Firmicutes.c__Negativicutes.o__Selenomonadales.f__Veillonellaceae.g__Megasphaera

-4.9886951

0.0012297

0.1516661

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Agathobacter

-4.6955635

0.0007094

0.1432304

 k__Bacteria.p__Actinobacteria.c__Coriobacteriia.o__Coriobacteriales.f__Eggerthellaceae.g__Gordonibacter

0.7041275

0.0053219

0.1969091

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Ruminococcaceae.g__GCA.900066225

1.931992

0.0007742

0.1432304

 k__Bacteria.p__Bacteroidetes.c__Bacteroidia.o__Bacteroidales.f__Bacteroidaceae.g__Bacteroides

2.8077757

0.0052738

0.1969091

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Eubacteriaceae.g__Eubacterium

3.2239335

0.0029386

0.1969091

 > 1M_significant_results

feature

coefficient

p value

q value

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Lachnospiraceae.g__Agathobacter

-5.6216565

0.0025782

0.2217262

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Ruminococcaceae.g__GCA.900066225

1.7187556

0.0007951

0.1367651

 k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Ruminococcaceae.g__Ruminococcus.2

1.2760845

0.002154

0.2217262