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Table 2 Transcription rates of genes involved in the oxidative stress response and energy metabolisma

From: Genome-wide transcriptional response to silver stress in extremely halophilic archaeon Haloferax alexandrinus DSM 27206 T

Hfx. alexandrinus DSM 27206 ORFb

Gene name

Log2FC

Annotation

 

0.1 mM

0.25 mM

0.5 mM

Hfx-2019-SC1-cds370

nhaC

4.16

2.1

2.31

Na+:H+antiporter

Hfx-2019-SC1-cds423

norB

2.35

-

-

Nitric oxide reductase subunit B

Hfx-2019-SC3-cds277

cydB

-

-

2.61

Cytochrome d ubiquinol oxidase subunit II

Hfx-2019-SC2-cds328

nuoCD

2.09

-

2.08

NADH-quinone oxidoreductase subunit C/D

Hfx-2019-SC5-cds137

 

2.25

-

2.07

Flavin-dependent oxidoreductase

Hfx-2019-SC5-cds143

putA

3.11

-

2.77

Aldehyde dehydrogenase (NAD+)

Hfx-2019-SC2-cds705

porB

-2.09

-

-

Pyruvate ferredoxin oxidoreductase beta subunit

Hfx-2019-SC2-cds772

   

-2.34

COG2210 Peroxiredoxin family protein member

Hfx-2019-SC4-cds7

narC

-

-

-4.28

Cytochrome b-561

Hfx-2019-SC4-cds158

 

-

-

-2.25

4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, N-terminal

Hfx-2019-SC4-cds159

 

-

-

- 2.15

Prokaryotic molybdopterin-containing oxidoreductase family, binding subunit

Hfx-2019-SC4-cds160

hybA

-

-

-2.89

Fe-S-cluster-containing hydrogenase components 1

Hfx-2019-SC4-cds161

 

-

-

-3.90

Prokaryotic molybdopterin-containing oxidoreductase family, membrane subunit

Hfx-2019-SC4-cds162

torD

-

-

-4.79

Uncharacterized component of anaerobic dehydrogenases

Hfx-2019-SC4-cds163

 

-

-

-5.16

Oxidoreductase, molybdopterin-binding domain containing protein

Hfx-2019-SC4-cds242

 

- 2.95

-

-

Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) familymember

  1. aRNA-Seq was used to determine the expression levels of the genes in Hfx. alexandrinus DSM 27206, as detailed in the section on Materials and Methods. The data are the average of three replicates. The threshold of differential expression genes was: |log2(FoldChange)|> 1 and qvalue < 0.00. Dashes indicate that there were minimal changes to the transcription, not considered statistically significant. bThe gene name, number, and annotation were generated through the gDNA sequencing of the tested strain, as described in the Materials and Methods section