Table 3 Predicted genes in LPS biosynthesis
Gene Tag | Gene | Annotation |
|---|---|---|
KDO biosynthesis | ||
GYF_00028 | kdsA | 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
GYF_02650 | kdsB | 3-deoxy-manno-octulosonate cytidylyltransferase |
GYF_02059 | kdsC | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
GYF_02058 | kdsD | arabinose-5-phosphate isomerase |
GYF_03747 | atoA | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
GYF_03746 | atoD | Arabinose-5-phosphate isomerase |
Lipid A biosynthesis | ||
GYF_01039 | lpxA | UDP-N-acetylglucosamine acyltransferase |
GYF_01040 | lpxB | Lipid A disaccharide synthetase |
GYF_01706 | lpxC | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
GYF_01037 | lpxD | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
GYF_01102 | lpxH | UDP-2,3-diacylglucosamine hydrolase |
GYF_02844 | lpxK | Tetraacyldisaccharide-1-P 4’-kinase |
GYF_03243 | lpxL-1 | Lipid A biosynthesis lauroyl acyltransferase |
GYF_03244 | lpxL-2 | Lipid A biosynthesis lauroyl acyltransferase |
Core oligosaccharide biosynthesis | ||
GYF_03850 | rfaG | Glycosyltransferase |
GYF_02341 | rfaL | O-Antigen ligase |
GYF_02561 | rfaS | Lipopolysaccharide core biosynthesis protein |
GYF_00179 | kdtA | 3-deoxy-D-manno-octulosonic-acid transferase |
GYF_02340 | wcaA | UDP-glucose LOS-beta-1,4 glucosyltransferase |
O-polysaccharide receptor biosynthesis | ||
GYF_03348 | wbbL | Rhamnosyltransferase |
GYF_00472 | rmlA1 | Glucose-1-phosphate thymidylyltransferase 1 |
GYF_00473 | rmlC | dTDP-4-dehydrorhamnose 3,5-epimerase |
GYF_02287 | rmlD | dTDP-4-dehydrorhamnose reductase |
GYF_02289 | rmlB | dTDP-glucose 4,6-dehydratase |
Lipid A modification | ||
GYF_03803 | eptA | Lipid A phosphoethanolamine transferase |
LPS transport | ||
GYF_00897 | lptA | Lipopolysaccharide transport periplasmic protein |
GYF_00165 | lptD | Lipopolysaccharide transport protein D |
GYF_00912 | lptG | LPS export ABC transporter permease |