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Table 1 Clinical, epidemiological and molecular characteristics of Staphylococcus/Mammaliicoccus species recovered from DFUs and Healthy skin (n = 58)

From: Whole genome sequencing and pan-genome analysis of Staphylococcus/Mammaliicoccus spp. isolated from diabetic foot ulcers and contralateral healthy skin of Algerian patients

Patient

Age/sex

PEDIS grade

Ulcer location

Antibiotics

Isolates (n)

Origin

species

SCCmec

ST-spa

P01

73/M

3

Forefoot

Ciprofloxacin

3

DFU

S. aureus

IVd(2B)

ST672-t3841

      

HS

S. aureus

IVd(2B)

ST672-t3841

      

HS

S. epidermidis

MSCoNS

ST54

P02

51/F

3

Midfoot

Amoxicillin-clavulanate

2

HS

S. aureus

IVc(2B)

ST80-t1247

      

HS

S. aureus

III(3 A)

STNF-t037

P03

61/M

4

Heel

Metronidazole, Cefotaxime

3

DFU

S.aureus

IVc(2B)

ST80-t044

      

HS

S.aureus

IVc(2B)

ST80-t044

      

HS

S. haemolyticus

MSCoNS

ST3§

P04

62/M

3

Forefoot

Clindamycin, Ciprofloxacin

2

DFU

S. epidermidis

MSCoNS

ST54

      

HS

S. epidermidis

MSCoNS

ST54

P05

60/F

4

Midfoot

Metronidazole, Cefotaxime

3

DFU

S. epidermidis

MSCoNS

ST54

      

HS

S. haemolyticus

MSCoNS

ST29

      

HS

M. sciuri

III(3 A)

STNF

P06

71/M

3

Forefoot

Ciprofloxacin

2

DFU

S. epidermidis

MSCoNS

ST54

      

HS

S. epidermidis

MSCoNS

ST54

P07

61/M

3

Forefoot

Clindamycin

1

HS

S. epidermidis

MSCoNS

STNF

P08

63/F

3

Heel

Metronidazole, Cefotaxime

1

HS

S. haemolyticus

MSCoNS

ST25

P09

64/M

4

Forefoot

Cefotaxime

3

DFU

S. aureus

IVc(2B)

ST80-t044

      

DFU

S. caprae

MSCoNS

STNF

      

HS

S. aureus

IVc(2B)

ST80-t044

P10

73/M

2

Heel

Amoxicillin-clavulanate

2

DFU

S. aureus

MSSA

ST291-t937

      

HS

S. hominis

MSCoNS

STNF

P11

66/M

2

Midfoot

Clindamycin

1

DFU

S. aureus

III(3 A)

STNF-t037

P13

54/M

4

Forefoot

Bactrim

1

HS

S. epidermidis

MSCoNS

ST35

P14

80/F

2

Forefoot

Imipenem

1

HS

S. haemolyticus

MSCoNS

ST3

P15

74/M

2

Heel

Amoxicillin-clavulanate

3

DFU

S. aureus

III(3 A)

ST241-t037

      

HS

S. aureus

III(3 A)

ST241-t037

      

HS

S. epidermidis

MSCoNS

ST35

P16

61/M

3

Forefoot

Cefazolin

2

DFU

S. aureus

III(3 A)

ST241-t037

      

HS

S. haemolyticus

MSCoNS

ST3

P17

70/M

2

Heel

Bactrim

2

DFU

S. epidermidis

MSCoNS

ST640

      

HS

S. simulans

MSCoNS

STNF

P18

49/M

4

Midfoot

Clindamycin, Cefotaxime

1

HS

S. simulans

MSCoNS

STNF

P19

44/M

3

Forefoot

Imipenem

2

DFU

S. caprae

MSCoNS

STNF

      

HS

S. simulans

MSCoNS

STNF

P20

71/M

2

Midfoot

Imipenem

1

HS

S. haemolyticus

MSCoNS

ST1

P26

85/M

4

Heel

Clindamycin, Ciprofloxacin

1

DFU

S. aureus

III(3 A)

STNF-t037

P27

82/M

4

Forefoot

Metronidazole, Cefotaxime

1

HS

S. haemolyticus

MSCoNS

ST56

P28

72/M

4

Midfoot

Metronidazole, Cefotaxime

1

HS

S. haemolyticus

MSCoNS

ST25

P29

54/M

3

Heel

Bactrim, Cefotaxime

1

HS

S. aureus

IVc(2B)

ST80-t044

P30

59/M

3

Forefoot

Ciprofloxacin

1

HS

S. aureus

MSSA

ST97-t9432

P31

64/M

4

Forefoot

Clindamycin, Ciprofloxacin

1

DFU

S. aureus

IVd(2B)

ST672-t3841

P32

60/M

3

Heel

Metronidazole, Cefotaxime

2

DFU

S. aureus

III(3 A)

ST241-t037

      

HS

S. aureus

III(3 A)

ST241-t037

S16*

57/F

3

Heel

Cefazolin

1

DFU

S. aureus

MSSA

STNF-t037

S17K*

72/M

2

Heel

Amoxicillin-clavulanate

1

DFU

S. aureus

IVc(2B)

ST80-t044

S104K*

60/F

2

Midfoot

Imipenem

1

DFU

S. aureus

IVc(2B)

ST80-t044

S4K*

59/M

2

Forefoot

Clindamycin, Ciprofloxacin

1

DFU

S. saprophyticus

MSCoNS

STNF

S6K*

49/M

3

Midfoot

Bactrim

1

DFU

S. aureus

IVc(2B)

ST80-t044

S7K*

58/M

3

Heel

Ciprofloxacin

1

DFU

S. aureus

IVc(2B)

ST80-t044

S8K*

60/M

4

Heel

Metronidazole, Cefotaxime

1

DFU

S. aureus

IVc(2B)

ST80-t044

S9K*

52/M

3

Midfoot

Cephalexin, Gentamicin

1

DFU

S. aureus

IVc(2B)

ST80-t044

S10K*

60/M

4

Forefoot

Metronidazole, Cefotaxime

1

DFU

S. aureus

IVc(2B)

ST80-t044

S11K*

67/M

4

Heel

Clindamycin, Ciprofloxacin

2

DFU

S. aureus

IVc(2B)

ST80-t044

   

Forefoot

  

DFU

S. aureus

IVc(2B)

ST80-t044

S12K*

85/M

3

Forefoot

Ciprofloxacin

2

DFU

S. aureus

IVc(2B)

ST80-t044

   

Heel

  

DFU

S. aureus

MSSA

ST1-t127

S14K*

60/F

4

Midfoot

Cefazolin

1

DFU

S. aureus

MSSA

ST1-t127

  1. DFU: diabetic foot ulcer, HS: healthy skin; M: Male, F: female; MSSA: methicillin-sensitive S. aureus; MSCoNS: methicillin-sensitive coagulase negative staphylococci; ST: sequence type; STNF: ST not found; SCCmec: Staphylococcal Cassette Chromosome mec. *Patients sampled only from DFU (additional strains). § Novel allele, ST may indicate nearest ST. Values are numbers