Fig. 5

Phylogenetic analysis with AMR genes and plasmid types of K. pneumoniae whole-genome datasets. The whole-genome phylogenetic tree comparing 69 strains was constructed based on whole-genome SNPs from K. pneumoniae HS11286. The ST378 K. pneumoniae isolates of this study were highlighted with yellow background. The AMR gene prevalence was presented as yellow heatmap. The plasmid incompatibility types were presented as read heatmap. The resistance gene and plasmid type metadata listed in this heatmap are presented in Supplementary Table S4 and Supplementary Table S5. The phylogenetic tree was visualized using the iTOLs