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Table 3 Prevalence and genotypes of Encephalitozoon spp. in diarrheic pigs in Chongqing and Sichuan Provinces

From: First identification and coinfection detection of Enterocytozoon bieneusi, Encephalitozoon spp., Cryptosporidium spp. and Giardia duodenalis in diarrheic pigs in Southwest China

Provinces

Farms

â„– tested

Eb*

Enc.

spp.

Mono infection of Ec.

Mixed infection of Eb & Ec.

Mono infection of

E. hellem

Mixed infection of Eb & Eh

No.

(%)

No. (%)

Genotype (No.)

No.

(%)

Genotype

(No.)

Genotype (No.)

No.

(%)

Genotype

(No.)

Sichuan

1

23

23 (100.0)

5 (21.7)

0

2

PigCE07.01 + III (1), PigCE02.03 + III (1)

0

3

PigCE01.01 + TURK1B (1), PigCE02.01 + TURK1B (1), PigCE08.03 + TURK1B (1)

2

48

45 (93.8)

10 (20.8)

0

5

B + III (3), PigCE06.02 + III (1),

PigCE08.05 + III (1)

0

5

PigCE01.02 + TURK1B (2), PigCE08.02 + TURK1B (1), PigCE07.05 + TURK1B (1), PigCE06.04 + TURK1B (1)

5

5 (100.0)

3 (60)

0

3

PigCE07.07 + II (1), PigCE07.05 + II (1), PigCE08.05 + III (1)

0

 

0

3

50

39 (78.0)

7 (14)

III (1)

3

PigCE08.07 + III (2), PigCE08.11 + III (1)

TURK1B (1)

2

B + TURK1B (1), PigCE08.02 + TURK1B (1)

4

50

46 (92.0)

16 (32)

0

12

PigCE08.07 + II (1), PigCE07.05 + III (1),

PigCE01.04 + III (1), PigCE08.09 + III (1),

PigCE08.15 + III (2), PigCE01.06 + III (1),

B + III (1), PigCE08.02 + III (3),

PigCE08.05 + III (1)

 

4

PigCE06.01 + TURK1B (1), PigCE07.08 + TURK1B (1),

PigCE07.09 + TURK1B (1), B + TURK1B (1)

5

23

22 (95.7)

16 (69.6)

III (1)

13

PigCE08.07 + III (1), PigCE01.0 2 + III (1), PigCE08.17 + III (1), PigCE08.02 + III (6), PigCE07.01 + III (1), PigCE07.09 + III (2), B + III (1)

 

2

PigCE08.07 + TURK1B (1), PigCE08.04 + TURK1B (1)

6

30

28 (93.3)

0 (0)

0

 

0

0

  

20

13 (65.0)

1 (5)

 

1

B + III (1)

0

  

7

40

24 (60.0)

0 (0)

0

 

0

0

  

11

7 (63.6)

1 (9.1.)

 

1

PigCE08.02 + III (1)

0

  

8

45

34 (75.6)

0 (0)

0

 

0

0

  

5

5 (100.0)

0 (0)

0

 

0

0

  

9

50

35 (70.0)

2 (4)

0

 

0

0

2

PigCE08.02 + TURK1B (1), PigCE08.10 + TURK1B (1)

Sub total

400

326 (81.5)

61 (15.3)

III (2)

40

II (3), III (37)

1

18

 

Chongqing

10

20

15 (75.0)

4 (20)

0

4

B + II (1), B + III (2), PigCE02.06 + III (1)

0

  

14

14 (100.0)

2 (14.3)

0

1

PigCE01.01 + III (1)

 

1

PigCE07.01 + TURK1B (1)

11

20

11 (55.0)

5 (25)

III (2)

3

PigCE08.02 + II (1), PigCE07.02 + II (1),

PigCE08.02 + III (1)

0

  

12

9

5 (55.6)

0 (0)

0

0

0

0

  

6

5 (83.3)

0 (0)

0

0

0

0

  

1

0 (0.0)

0 (0)

0

0

0

0

  

13

25

21 (84.0)

7 (28)

0

6

 F + II (2), E + III (1), F + III (1), Peru8 + III (1), PigCE05.01 + III (1)

TURK1B (1)

0

 

8

6 (75.0)

0 (0)

0

0

0

0

0

 

6

5 (83.3)

2 (33.3)

0

2

B + III (1), PigCE08.02 + III (1)

0

0

 

14

5

2 (40.0)

2 (40)

II (1), III (1)

0

0

0

0

 

Sub total

114

84 (73.7)

22 (19.3)

II (1), III (3)

16

II (5), III (11)

1

1

 

Total

514

410 (79.8)

83

(16.1)

II (1), III (5)

56 (10.9)

PigCE07.02 + II (1); PigCE07.05 + II (1); PigCE07.07 + II (1); PigCE08.02 + II (1); PigCE08.07 + II (1); B + II (1); F + II (2); PigCE01.01 + III (1); PigCE01.02 + III (1); PigCE01.04 + III (1); PigCE01.06 + III (1); PigCE02.03 + III (1); PigCE02.06 + III (1); PigCE05.01 + III (1); PigCE06.02 + III (1); PigCE07.01 + III (2); PigCE07.05 + III (1); PigCE07.09 + III (2); PigCE08.02 + III(12);PigCE08.05 + III (3); PigCE08.07 + III (3); PigCE08.09 + III (1); PigCE08.11 + III (1); PigCE08.15 + III (2); PigCE08.17 + III (1); B + III (9); E + III (1); F + III(1), Peru8 + III (1)

TURK1B (2)

19

(3.7)

B + TURK1B (2); PigCE01.01 + TURK1B (1); PigCE01.02 + TURK1B (2); PigCE02.01 + TURK1B (1); PigCE06.01 + TURK1B (1); PigCE06.04 + TURK1B (1); PigCE07.01 + TURK1B (1); PigCE07.05 + TURK1B (1); PigCE07.08 + TURK1B (1); PigCE07.09 + TURK1B (1); PigCE08.02 + TURK1B (3); PigCE08.03 + TURK1B (1); PigCE08.04 + TURK1B (1); PigCE08.07 + TURK1B (1); PigCE08.10 + TURK1B (1)

Total

62/514 (12%)

 

21/514 (4%)

 
  1. Eb = E. bieneusi; Enc. spp.= Encephalitozoon species; Ec. = E. cuniculi; Eb*= data from [29]
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