Table 4 Top ten cytoHubba-ranked genes from among the top-16 with respect to node degree
No. | Gene ID | Gene Name | Number of methods ranking this protein among top ten | Names of 12 ranking methods of CytoHubba and rank score provided by them | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Degree | MNC | DMNC | MCC | Bottleneck | EcCentricity | Closeness | Radiality | Betweenness | Stress | CC | EPC | ||||
1 | PA0520 | nirQ | 12 | 11 | 11 | 0.729 | 46,200 | 1 | 0.5 | 13 | 3 | 5.788 | 36 | 0.781 | 6.331 |
2 | PA3392 | nosZ | 12 | 10 | 10 | 0.758 | 45,480 | 3 | 0.5 | 12.5 | 2.93 | 3.404 | 24 | 0.844 | 6.255 |
3 | PA0519 | nirS | 10 | 14 | 14 | - | 46,344 | 7 | 0.5 | 14.5 | 3.2 | 34.704 | 124 | - | 6.928 |
4 | PA0524 | norB | 10 | 13 | 13 | 0.638 | 46,320 | - | 0.5 | 14 | 3.13 | 18.621 | 92 | - | 6.827 |
5 | PA0516 | nirF | 10 | 12 | 12 | 0.658 | 45,600 | - | 0.5 | 13.5 | 3.06 | 13.738 | 72 | - | 6.663 |
6 | PA0521 | Cyto.c | 10 | 10 | 10 | 0.778 | 46,080 | - | - | 12.33 | 2.86 | 2.038 | 12 | 0.866 | 6.084 |
7 | PA0525 | norD | 9 | 10 | 10 | 0.778 | 46,080 | - | - | 12.33 | 2.86 | 2.038 | - | 0.866 | 6.064 |
8 | PA3877 | narK1 | 9 | 9 | 9 | - | - | 2 | 0.5 | 12 | 2.86 | 15.750 | 82 | - | 5.714 |
9 | PA0518 | nirM | 9 | 8 | 8 | 0.758 | 5760 | 1 | 0.33 | 11.33 | 2.73 | - | - | 0.928 | - |
10 | PA3395 | nosY | 9 | 8 | 8 | 0.816 | 40,320 | 1 | - | 11.33 | 2.73 | - | - | 1 | 5.642 |