Table 3 List of DEGs in Silversol exposed P. aeruginosa satisfying the dual criteria of log fold-changeāā„ā2 and FDRāā¤ā0.05
Sr. No. | Gene ID | Gene Symbol | Codes for | Log FC | FDR | Up- or down-regulation | Node degree |
|---|---|---|---|---|---|---|---|
1 | PA0522 | NA | hypothetical protein | 4.9 | 5.87E-06 | ā | 6 |
2 | PA2691 | NA | conserved hypothetical protein | 4.2 | 5.10284E-05 | ā | 0 |
3 | PA2689 | NA | hypothetical protein | 4.02 | 0.0002 | ā | 0 |
4 | PA0521 | NA | probable cytochrome c oxidase subunit | 3.91 | 0.0002 | ā | 10 |
5 | PA4623 | NA | hypothetical protein | 3.5 | 0.001 | ā | 2 |
6 | PA3237 | NA | hypothetical protein | 3.47 | 0.001 | ā | 0 |
7 | PA0524 | norB | nitric-oxide reductase subunit B | 3.41 | 0.001 | ā | 13 |
8 | PA3877 | narK1 | nitrite extrusion protein 1 | 3.27 | 0.003 | ā | 9 |
9 | PA3872 | narI | respiratory nitrate reductase gamma chain | 3.21 | 0.01 | ā | 7 |
10 | PA2868 | NA | hypothetical protein | 3.16 | 0.01 | ā | 0 |
11 | PA3871 | NA | probable peptidyl-prolyl cis-trans isomerase, PpiC-type | 3.01 | 0.02 | ā | 4 |
12 | PA0532 | NA | hypothetical protein | 2.99 | 0.01 | ā | 0 |
13 | PA3395 | nosY | NosY protein | 2.98 | 0.02 | ā | 8 |
14 | PA0520 | nirQ | regulatory protein NirQ | 2.9 | 0.02 | ā | 11 |
15 | PA3873 | narJ | respiratory nitrate reductase delta chain | 2.89 | 0.04 | ā | 5 |
16 | PA0516 | nirF | heme d1 biosynthesis protein NirF | 2.84 | 0.02 | ā | 12 |
17 | PA2663 | ppyR | psl and pyoverdine operon regulator, PpyR | 2.82 | 0.05 | ā | 0 |
18 | PA0518 | nirM | cytochrome c-551 precursor | 2.82 | 0.03 | ā | 8 |
19 | PA0519 | nirS | nitrite reductase precursor | 2.74 | 0.03 | ā | 14 |
20 | PA0525 | NA | probable dinitrification protein NorD | 2.73 | 0.03 | ā | 10 |
21 | PA3392 | nosZ | nitrous-oxide reductase precursor | 2.72 | 0.03 | ā | 10 |
22 | PA4354 | NA | conserved hypothetical protein | 2.7 | 0.04 | ā | 2 |
23 | PA3393 | nosD | NosD protein | 2.6 | 0.05 | ā | 8 |
24 | PA3407 | hasAp | heme acquisition protein HasAp | 2.59 | 0.05 | ā | 0 |
25 | PA3874 | narH | respiratory nitrate reductase beta chain | 2.58 | 0.05 | ā | 7 |
26 | PA1942 | NA | hypothetical protein | 2.57 | 0.05 | ā | 2 |