Table 2 Structural proteome of phage Arash. For each identified protein, the sequence coverage, the unique peptide count and the number of total detected spectra are reported. For proteins previously annotated as hypothetical, but now re-annotated as being structural, the functional annotation is italicized
From: Isolation and molecular characterization of the Salmonella Typhimurium orphan phage Arash
Protein | Functional annotation | Coverage | # Unique Peptides | # Spectra |
|---|---|---|---|---|
Gp004 | Structural protein | 87,88% | 60 | 1952 |
Gp006 | Structural protein | 87,66% | 16 | 280 |
Gp007 | Structural protein | 76,99% | 7 | 202 |
Gp008 | Cell wall hydrolase, structural protein | 80,52% | 44 | 777 |
Gp010 | RNA polymerase sigma factor RpoS | 100,00% | 24 | 467 |
Gp011 | Structural protein | 100,00% | 2 | 156 |
Gp012 | Structural protein | 77,38% | 7 | 253 |
Gp013 | Structural protein | 82,95% | 29 | 517 |
Gp014 | Structural protein | 60,44% | 15 | 474 |
Gp015 | Structural protein | 76,22% | 4 | 160 |
Gp016 | Structural protein | 100,00% | 10 | 222 |
Gp017 | Structural protein | 64,67% | 3 | 80 |
Gp019 | Deoxynucleoside monophosphate kinase | 100,00% | 5 | 116 |
Gp021 | Structural protein | 89,13% | 2 | 324 |
Gp023 | Pyrophosphatase | 53,14% | 3 | 173 |
Gp024 | Structural protein | 97,60% | 10 | 273 |
Gp026 | Structural protein | 100,00% | 2 | 31 |
Gp027 | Ribonucleotide reductase of class Ia (aerobic), alpha subunit | 93,06% | 11 | 663 |
Gp028 | Phosphohydrolase | 56,85% | 2 | 56 |
Gp029 | Structural protein | 98,04% | 3 | 90 |
Gp040 | Pyrophosphohydrolase | 99,64% | 3 | 253 |
Gp042 | Structural protein | 73,38% | 3 | 150 |
Gp046 | Structural protein | 100,00% | 4 | 67 |
Gp047 | Structural protein | 89,03% | 7 | 331 |
Gp049 | Structural protein | 100,00% | 8 | 307 |
Gp050 | Structural protein | 73,08% | 3 | 292 |
Gp051 | Structural protein | 100,00% | 5 | 168 |
Gp052 | Structural protein | 99,16% | 2 | 318 |
Gp057 | Structural protein | 100,00% | 2 | 287 |
Gp058 | Phosphoesterase | 98,86% | 3 | 76 |
Gp061 | Ribonucleotide reductase of class Ia (aerobic), alpha subunit | 100,00% | 2 | 112 |
Gp065 | Structural protein | 76,28% | 4 | 75 |
Gp067 | Structural protein | 77,48% | 5 | 432 |
Gp070 | Structural protein | 100,00% | 3 | 110 |
Gp071 | Structural protein | 95,40% | 2 | 96 |
Gp082 | Structural protein | 87,50% | 3 | 103 |
Gp089 | Structural protein | 100,00% | 4 | 80 |
Gp092 | HNH homing endonuclease | 98,20% | 2 | 193 |
Gp093 | Structural protein | 100,00% | 3 | 115 |
Gp095 | Structural protein | 99,22% | 5 | 406 |
Gp096 | Structural protein | 98,22% | 15 | 816 |
Gp097 | Structural protein | 97,27% | 24 | 1060 |
Gp100 | Structural protein | 98,84% | 9 | 471 |
Gp103 | Structural protein | 100,00% | 10 | 164 |
Gp113 | Structural protein | 90,58% | 4 | 160 |
Gp117 | Structural protein | 84,29% | 2 | 305 |
Gp118 | Structural protein | 88,76% | 9 | 265 |
Gp120 | RNA ligase | 70,63% | 3 | 300 |
Gp121 | Structural protein | 100,00% | 3 | 209 |
Gp129 | Structural protein | 87,11% | 4 | 246 |
Gp132 | Structural protein | 72,22% | 6 | 121 |
Gp134 | Structural protein | 100,00% | 2 | 91 |
Gp138 | Structural protein | 100,00% | 9 | 180 |
Gp140 | Structural protein | 100,00% | 13 | 334 |
Gp141 | Structural protein | 87,87% | 26 | 836 |
Gp143 | RNA ligase | 100,00% | 14 | 204 |
Gp149 | Structural protein | 100,00% | 2 | 140 |
Gp151 | Structural protein | 100,00% | 2 | 98 |
Gp156 | Structural protein | 100,00% | 9 | 469 |
Gp157 | Nicotinamide phosphoribosyltransferase | 74,21% | 3 | 423 |
Gp159 | Structural protein | 80,72% | 5 | 195 |
Gp165 | Structural protein | 100,00% | 2 | 254 |
Gp167 | Structural protein | 83,83% | 2 | 179 |
Gp168 | Uracil DNA glycosylase | 98,66% | 3 | 513 |
Gp169 | Structural protein | 55,03% | 6 | 259 |
Gp173 | Structural protein | 100,00% | 16 | 299 |
Gp177 | DNA ligase | 100,00% | 2 | 495 |
Gp182 | RNA exonuclease | 90,24% | 6 | 160 |
Gp183 | DNA primase | 89,74% | 2 | 932 |
Gp185 | Structural protein | 100,00% | 9 | 301 |
Gp186 | Structural protein | 100,00% | 8 | 98 |
Gp187 | Structural protein | 100,00% | 9 | 221 |
Gp188 | Structural protein | 100,00% | 30 | 561 |
Gp190 | Tail fiber protein | 51,40% | 4 | 92 |
Gp191 | Tail protein | 79,96% | 58 | 832 |
Gp193 | ATP-dependent DNA helicase | 92,28% | 2 | 217 |
Gp194 | Structural protein | 100,00% | 9 | 159 |
Gp197 | ATP-dependent DNA helicase | 93,11% | 2 | 517 |
Gp199 | Structural protein | 70,00% | 9 | 245 |
Gp202 | Structural protein | 79,59% | 6 | 125 |
Gp204 | Portal protein | 93,44% | 32 | 877 |
Gp206 | DNA-directed RNA polymerase subunit beta | 100,00% | 128 | 3516 |
Gp210 | Structural protein | 100,00% | 7 | 111 |
Gp213 | Structural protein | 93,46% | 7 | 143 |
Gp216 | DNA-directed RNA polymerase subunit beta’ | 89,11% | 40 | 1210 |
Gp217 | DNA helicase | 100,00% | 38 | 1148 |
Gp218 | Structural protein | 89,11% | 36 | 1149 |
Gp220 | Structural protein | 95,77% | 6 | 289 |
Gp221 | Structural protein | 100,00% | 8 | 355 |
Gp222 | Structural protein | 84,93% | 16 | 365 |
Gp223 | Structural protein | 100,00% | 9 | 283 |
Gp224 | Structural protein | 100,00% | 8 | 222 |
Gp225 | Structural protein | 80,00% | 2 | 203 |
Gp225.1 | Structural protein | 100,00% | 14 | 582 |
Gp226 | Major capsid protein | 86,64% | 30 | 1333 |
Gp227 | Major tail protein | 72,08% | 17 | 406 |
Gp228 | Structural protein | 80,57% | 12 | 117 |
Gp229 | Structural protein | 68,84% | 79 | 1345 |
Gp230 | Structural protein | 60,49% | 20 | 245 |
Gp231 | Structural protein | 97,09% | 5 | 244 |
Gp232 | Structural protein | 100,00% | 9 | 172 |
Gp233 | Structural protein | 100,00% | 7 | 137 |
Gp234 | Structural protein | 87,16% | 11 | 397 |
Gp235 | Structural protein | 100,00% | 10 | 258 |
Gp236 | Structural protein | 80,59% | 32 | 689 |
Gp237 | Structural protein | 89,57% | 11 | 356 |
Gp238 | Structural protein | 90,26% | 12 | 371 |
Gp239 | PAAR-repeat central spike tip protein | 100,00% | 2 | 126 |
Gp242 | Structural protein | 100,00% | 21 | 550 |
Gp243 | Structural protein | 100,00% | 12 | 359 |
Gp244 | Structural protein | 80,50% | 3 | 80 |
Gp246 | Structural protein | 100,00% | 5 | 95 |
Gp247 | Structural protein | 77,17% | 3 | 430 |
Gp248 | Structural protein | 61,41% | 2 | 369 |
Gp249 | Structural protein | 100,00% | 5 | 226 |
Gp251 | Structural protein | 76,25% | 2 | 379 |