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Table 2 Resistance genes, resistance phenotypes and plasmid analysis of carbapenem-resistant P. rettgeri

From: Analysis of resistance genes of carbapenem-resistant Providencia rettgeri using whole genome sequencing

Strain

Plasmid type

Resistant genes

Phenotype

Aminoglycosides

Fluoroquinolones

Macrolides

phenicol

Fosfomycin

Rifampicin

Sulfonamides

tetracycline

trimethoprim

β-lactams

Aminoglycosides

Fluoroquinolones

Sulfonamides

β-lactams

WF3099

/

aph(4)-Ia

aac(3)-IV

aph(3’’)-Ib

aph(6)-Id

aph(3’)-Ia

aph(3’)-VIa

aadA2

qnrA1

lnuF

mphE

msrE

floR

/

Arr3

sul1

sul2

tet(59)

dfrA12

blaOXA−1

blaNDM−1

/

CIP-LVX

SXT

SAM-TZP-CAZ-CSL- ETP

WF3279

repUS18_4_rep(pSA8589)

Col3M_1

aac(3)-IV

aph(4)-Ia

aph(3’’)-Ib

aph(6)-Id

ANT(2’’)-Ia

aadA16

aph (3’)-Ia

qnrD1

cfrA

mphE

msrE

catB8

floR

/

Arr3

sul1

sul2

sul3

tet(B)

tet(59)

dfrA27

blaOXA−1blaOXA−10

blaNDM−1

GEN-TOB

CIP-LVX

SXT

SAM-CAZ-CRO-CXM- IMP-MEM-ETP

WF3643

Col3M_1

aph(3’’)-Ib

aph(6)-Id

ANT(2’’)-Ia

qnrA1

qnrD1

lnuF

mphE

msrE

lnuG

catB8

FosA3

Arr3

sul1

sul2

tet(B)

/

blaOXA−10

blaNDM−1

GEN-TOB

CIP-LVX

SXT

SAM-CAZ-CRO-CTX-CXM-CSL- IMP-ETP

WF3821

/

aph(6)-Id

aph(3’’)-Ib

aph(3’)-Ia

ANT(2’’)-Ia

ANT(3’’)-IIa

qnrA1

/

catA1

catB8

floR

/

Arr3

sul1

sul2

tet(B)

/

blaOXA−10

blaNDM−1

/

CIP-LVX

/

SAM-CAZ-CRO-CTX-CXM-IMP-MEM-ETP

WF3822

Col3M_1

aph(4)-Ia

aac(3)-IV

aph (3’)-Ia

aadA2

qnrD1

lnuG

mphE

msrE

floR

/

Arr3

sul1

sul2

tet(B)

dfrA12

blaNDM−1

GEN

CIP-LVX

SXT

SAM-CAZ-CRO-CTX-CXM-IMP-MEM-ETP

WF3849

Col3M_1

ANT(2’’)-Ia

ANT(3’’)-IIa

qnrD1

/

cmlA5

/

Arr2

sul1

 

/

blaOXA−10

blaVEB−1

blaNDM−1

/

CIP-LVX

/

SAM-TZP-CAZ-CRO-CTX-CXM-CSL-IMP-MEM-ETP

  1. * The grey part indicates carbapenem resistance genes and carbapenem antibacterial drugs / represents no resistance genes or no resistant antimicrobial drugs or no plasmids