Fig. 5
From: Putative mobilized colistin resistance genes in the human gut microbiome
Phylogenetic tree of MCR-like sequences. We used only sequences present in contigs classified as plasmids and we clusterized similar sequences with CD-HIT on 97% similarity. The phylogenetic informative regions were selected by BMGE and the Maximum likelihood (ML) phylogenetic tree was calculated by PhyML 3.0 with the model selection performed by SMS (AIC method) and 100 bootstrap replicates to infer significance. We added clinical MCR sequences from NCBI to the analysis (preceded by an accession number starting with WP). UHGG sequences predicted to be located on a plasmid by PlasFlow contain the “plasmid” note