Table 3 Analysis of PCR product lengths in nucleotides, single nucleotide polymorphisms (SNPs), insertion and deletions detected in the GpSGHV haplotypes in the Glossina species
From: Hytrosavirus genetic diversity and eco-regional spread in Glossina species
Haplotype | Species | Location | PCR Length: (SNPs, insertion, deletion) (bp) | No. of nonsynonymous mutations (aa) | ||||
|---|---|---|---|---|---|---|---|---|
VNTR-1 | VNTR-2 | SGHV009 | SGHV010 | SGHV038 | (SGHV009, SGHV010, SGHV038) | |||
GpSGHV-Uga | Reference | NCBI | 370 | 437 | 535 | 1425 | 1461 | Reference |
H1 | G. pallidipes | Tororo | 370: (0,0,0) | 437: (0,0,0) | 535: (0,0,0) | 1425: (0,0,0) | 1461: (0,0,0) | (0,0,0) |
G. m. morsitans | Ruckomechi | |||||||
G. m. morsitans | Mfuwe | |||||||
G. m. morsitans | Makuti | |||||||
G. pallidipes | Ruckomechi | |||||||
G. pallidipes | Mashumbi | |||||||
G. m. morsitans | BioRI-KALRO | |||||||
G. m. morsitans | Kwekivu | |||||||
G. f. fuscipes | Buvuma Island | |||||||
G. p. palpalis | Malanga | |||||||
G. brevipalpis | Zululand | |||||||
G. austeni | Zululand | |||||||
H2 | G. pallidipes | Tororo | 370: (0,0,0) | 500: (2,63,0) | 535: (0,0,0) | 1425: (0,0,0) | 1461: (0,0,0) | (0,0,0) |
H3 | G. pallidipes | Tororo | 370: (0,0,0) | 500: (0,63,0) | 535: (0,0,0) | 1425: (0,0,0) | 1461: (0,0,0) | (0,0,0) |
H4 | G. pallidipes | Tororo | 370: (0,0,0) | 374: (0,0,63) | 535: (0,0,0) | 1425: (0,0,0) | 1461: (0,0,0) | (0.0,0) |
G. m. morsitans | Mfuwe | |||||||
G. austeni | Zululand | |||||||
H5 | G. pallidipes | Kwekivu | 416: (12,66,20) | 542: (15,105,0) | 538: (1,3,0) | 1425: (4,0,0) | 1467: (12,6,0) | (1,1,4) |
G. m. morsitans | Kwekivu | |||||||
G. m. morsitans | Ruckomechi | |||||||
G. m. morsitans | Mfuwe | |||||||
H6 | G. pallidipes | Kwamume | 415: (13,65,20) | 458: (14,21,1) | ? | ? | ? | ? |
H7 | G. pallidipes | Arba Minch | 272: (8,1,99) | 542: (24,126,20) | 571: (14,36,0) | 1425: (16,0,0) | 1458: (26,0,3) | (19,12,10) |
G. pallidipes | Ruckomechi | |||||||
H8 | G. pallidipes | Gokwe | ? | 483: (47,46,0) | ? | 1425: (14,0,0) | 1460: (14,0,0) | (?,9,2) |
G. pallidipes | Ruma N. Park | |||||||
H9 | G. pallidipes | Mwea | 431: (11,61,0) | 521: (30,84,0) | 523: (7,0,12) | 1425: (11,0,0) | 1460: (20,0,1) | (3,7,5) |
H10 | G. pallidipes | Koibos Soi | ? | 458: (40,21,0) | 529: (6,3,9) | 1425: (15,0,0) | 1461: (21,0,0) | (5,12,9) |
H11 | G. pallidipes | Koibos Soi | ? | 416: (36,0,21) | 529: (6,3,9) | 1425: (15,0,0) | 1461: (21,0,0) | (5,12,9) |
G. pallidipes | Emsos | |||||||
H12 | G. pallidipes | Emsos | ? | 416: (35,0,63) | 529: (6,3,9) | 1425: (15,0,0) | 1461: (21,0,0) | (5,12,9) |
H13 | G. pallidipes | Mfuwe | ? | 374: (3,0,63) | 535: (0,0,0) | 1425: (0,0,0) | 1461: (0,0,0) | (0,0,0) |
G. m. morsitans | Mfuwe | |||||||
H14 | G. swynnertoni | Ikorongo GR | ? | 503: (36,67,0) | 532: (3,0,3) | 1425: (14,0,0) | 1467: (16,6,0) | (1,9,6) |
H15 | G. pallidipes | Mwea | 431: (11,61,0) | 521: (30,84,0) | 532: (3,3,6) | 1425: (11,0,0) | 1460: (20,0,1) | (2,7,5) |