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Table 1 Web of Microbes Data Examples

From: Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes

Field/Use-case

Example in WoM

WoM featurea

Ecosystem biology

Biocrust bacteria interactions with Microcoleus vaginatus metabolites [18]

The Web, One Metabolite

Metabolic responses to metabolite composition

Comparison of Synechococcus sp. in four types of growth media [8]

One Organism

Environmental microbiology

Soil bacteria carbon utilization in complex culture media (see Additional file 1: Appendix file methods)

One Environment, EUS, OCS-FME, OCS-FMC

Biotechnologies

Exometabolomics for design of synthetic mutualism systems [21]

OCS-FME

Native consortia

Biocrust porewater native microbial community incubations [18]

One Environment

Metabolic changes over time

Triculture of soil microbes in amino acid medium [19]

One Environment

  1. aThe Web, One Metabolite, One Organism and One Environment are all viewing features available on the Web of Microbes. The EUS, OCS-FME and OCS-FMC are compatibility scores available on the One Environment view. All features and WoM terminology are defined in Additional file 2: Appendix A