Strain or plasmid | Relevant characteristicsa | Source or Reference |
---|---|---|
Escherichia coli | ||
 DH5α | supE44 ΔlacU169(Φ80lacZΔM15) hsdR17 recA1 endA1 gyrA96 thi-1 relA1 | Hanahan 1983 [47] |
 BL21 | For protein expression | Novagen |
Xanthomonas oryzae pv. oryzae | ||
 PXO99A | Wildtype strain, Philippine race 6 | Lab collection |
 ∆catB | catB gene deletion mutant derived from PXO99A, Gmr | This study |
 ∆catB(pBBR-catB) | Complementary bacterium strain of ∆catB, Apr | This study |
 ∆oxyR | oxyR gene deletion mutant derived from PXO99A, Gmr | Our lab |
 ∆oxyR(pBBR-oxyR) | Complementary bacterium strain of ∆oxyR, Apr | Our lab |
Plasmid | ||
 pMD18-T | Cloning vector, Apr | TaKaRa, Tokyo |
 pET-28a | Expression vector to generate a N-terminal His6 tag, Kmr | Haigene |
 pK18mobsacB | Suicidal vector carrying sacB gene for mutagenesis, Gmr | Schafer et al., 1994 [44] |
 pBBR1MCS-4 | Broad-host range expression vector, Apr | Kovach et al., 1995 [48] |
 pHM1 | Broad-host range expression vector, Spr | Hopkins et al., 1992 [49] |
 pHT304BZ | Promoterless lacZ vector, Apr | Lereclus et al., 1996 [50] |
 pMDcatB | pMD18-T derivative carrying the full length of catB, Apr | This study |
 pMDcatBr | pMD18-T derivative carrying the right fragment of catB, Apr | This study |
 pMDcatBl | pMD18-T derivative carrying the left fragment of catB, Apr | This study |
 pMDoxyR | pMD18-T derivative carrying the full length of oxyR, Apr | This study |
 pKcatB | pK18mobsacB derivative carrying the full length of catB, Gmr | This study |
 pEToxyR | pET-28a derivative carrying the full length of oxyR, Kmr | This study |
 pBBR-catB | pBBR1MCS-4 derivative carrying the full length of catB, Apr | This study |
 pHTpB | pHT304BZ derivative carrying the promoter region of catB, Apr | This study |
 pH-lacZ | pHM1 derivative carrying the promoterless lacZ, Spr | This study |
 pH-catBp-lacZ | pHM1 derivative carrying the promoter region of catB and promoterless lacZ, Spr | This study |