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Fig. 6 | BMC Microbiology

Fig. 6

From: Comparative transcriptome analysis by RNAseq of necrotic enteritis Clostridium perfringens during in vivo colonization and in vitro conditions

Fig. 6

Hierarchical clustering in heat map format of all DEGs in NE C. perfringens strain CP1 grown under different conditions. Each horizontal row represents a differentially expressed gene, whereas each column represents a different growth condition. Green represents downregulated expression and red represents upregulated expression. Log2 values were used to cluster all the DEGs in Java TreeView by hierarchical clustering using Euclidean distance and pairwise average linkage methods

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