Table 1 S. aureus strains used in this study
From: The recombination dynamics of Staphylococcus aureus inferred from spA gene
Strain | MLST | spa type (Ridom) | Spa repeat pattern | MSSA/MRSA | Genome | |
|---|---|---|---|---|---|---|
ST | CC | Accession | ||||
JH1 | 105 | 5 | t002 | 26-23-17-34-17-20-17-12-17-16 | MRSA | NC_009632 |
JH9 | 105 | 5 | t002 | 26-23-17-34-17-20-17-12-17-16 | MRSA | NC_009487 |
Mu3 | 5 | 5 | t002 | 26-23-17-34-17-20-17-12-17-16 | MRSA | NC_009782 |
Mu50 | 5 | 5 | t002 | 26-23-17-34-17-20-17-12-17-16 | MRSA | NC_002758 |
N315 | 5 | 5 | t002 | 26-23-17-34-17-20-17-12-17-16 | MRSA | NC_002745 |
ECT-R2 | 5 | 5 | t002 | 26-23-17-34-17-20-17-12-17-16 | MSSA | NC_017343 |
ED98 | 5 | 5 | t002 | 26-23-17-34-17-20-17-12-17-16 | MSSA | NC_013450 |
04-02981 | 225 | 5 | t003 | 26-17-20-17-12-17-17-16 | MRSA | NC_017340 |
COL | 250 | 8 | t008 | 11-19-12-21-17-34-24-34-22-25 | MRSA | CP000046.1 |
FPR3757 | 8 | 8 | t008 | 11-19-12-21-17-34-24-34-22-25 | MRSA | NC_007793 |
Newman | 8 | 8 | t008 | 11-19-12-21-17-34-24-34-22-25 | MSSA | NC_009641 |
ST398 | 398 | 15 | t011 | 8-16-2-25-34-24-25 | MRSA | NC_017333 |
MRSA252 | 36 | 30 | t018 | 15-12-16-2-16-2-25-17-24-24-24 | MRSA | NC_002952 |
TCH60 | NI | NI | t019 | 8-16-2-16-2-25-17-24 | MSSA | NC_017342 |
M1 | 8 | 8 | t024 | 11-12-21-17-34-24-34-22-25 | MRSA | NC_021059 |
T0131 | 239 | 8 | t030 | 15-12-16-2-24-24 | MRSA | NC_017347 |
08BA02176 | 398 | 15 | t034 | 8-16-2-25-2-25-34-24-25 | MRSA | NC_018608 |
JKD6008 | 239 | 8 | t037 | 15-12-16-2-25-17-24 | MRSA | NC_017341 |
TW20 | 239 | 8 | t037 | 15-12-16-2-25-17-24 | MRSA | NC_017331 |
11819-97 | 80 | 80 | t044 | 7-23-12-34-34-33-34 | MRSA | NC_017351 |
10388 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579059.1 |
10497 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579061.1 |
15532 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579063.1 |
16035 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579065.1 |
16125 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579067.1 |
18341 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579069.1 |
18412 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579071.1 |
18583 | 228 | 5 | t1003 | 26-17-20-17-34-17-20-17-12-17-16 | MRSA | HE579073.1 |
HO50960412 | 22 | 22 | t1041 | 26-23-23-13-23-31-29-17-28 | MRSA | NC_017763 |
MW2 | 1 | 1 | t128 | 7-23-23-21-16-34-33-13 | MRSA | NC_003923 |
JKD6159 | 93 | 93 | t202 | 11-17-23-17-17-16-16-25 | MRSA | NC_017338 |
VC40 | 8 | 8 | t211 | 11-19-12-12-21-17-34-24-34-22-25 | MRSA | NC_016912 |
NCTC8325 | 8 | 8 | t211 | 11-19-12-12-21-17-34-24-34-22-25 | MSSA | NC_007795 |
133 | 842 | 97 | t2678 | 3-16-12-21-17-23-13-17-17-17-23-24 | MSSA | NC_017337 |
M013 | 59 | 59 | t437 | 4-20-17-20-17-25-34 | MRSA | NC_016928 |
RF122 | 151 | 705 | t529 | 4-34 | MSSA | AJ938182.1 |
71193 | 398 | 15 | t571 | 8-16-2-25-2-25-34-25 | MSSA | NC_017673 |
476 | 1 | 1 | t607 | 7-16-23-21-16-34-33-13 | MSSA | NC_002953 |
TCH1516 | 8 | 8 | t622 | 11-19-12-21-17-34-22-25 | MSSA | NC_010079 |
LGA251 | 425 | 425 | t6300 | 14-44-12-17-23-18-110-17-17-23-24 | MRSA | NC_017349 |
MSHR1132 | 1850 | 75 | NI | 259-31-17-17-17-22-17-17-23-17-22 | MRSA | NC_016941 |