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Table 1 Genes showing altered expression in the Δ luxR mutant compared to wild-type V. vulnificus

From: Role of AcsR in expression of the acetyl-CoA synthetase gene in Vibrio vulnificus

Identification

ORF description

Relative expression a (P-value)

COG b

VVMO6_00196

Transcriptional regulator LuxR family

0.007(0.000)

K

VVMO6_00187

Acetyl-coenzyme A synthetase

0.51 (0.037)

I

VVMO6_00310

Phosphoenolpyruvate caroxylase

0.54 (0.032)

C

VVMO6_00392

Aspartate carbamoyltransferase

0.53 (0.027)

E

VVMO6_00195

Multiple antibiotic resistance protein MarC

0.08 (0.049)

V

VVMO6_00366

MASHA biogenesis protein MshM

0.25 (0.007)

U

VVMO6_00368

MASHA biogenesis protein MshE

0.25 (0.001)

U

VVMO6_00369

MASHA biogenesis protein MshG

0.30 (0.009)

U

VVMO6_00370

MASHA biogenesis protein MshF

0.32 (0.008)

U

VVMO6_00372

MASHA pilin protein MshA

0.50 (0.045)

U

VVMO6_03644

Cold-shock DEAD-box protein A

0.54 (0.031)

J

VVMO6_01193

Head-to-tail joining protein

0.53 (0.010)

R

VVMO6_01633

Glycosyltransferase SypQ

2.74 (0.040)

G

VVMO6_03716

Inosine-guanosine kinase

2.35 (0.041)

F

VVMO6_04198

Non-ribosomal peptide synthetase modules siderophore biosynthesis

3.80 (0.032)

Q

VVMO6_01224

Redox protein

2.09 (0.036)

V

VVMO6_03898

VgrG protein

2.30 (0.020)

U

VVMO6_04555

Positive regulator of CheA protein (CheW)

2.16 (0.018)

N

VVMO6_03446

MutT/nudix family protein

2.02 (0.025)

L

VVMO6_01214

Hypothetical protein

2.14 (0.043)

S

VVMO6_02404

Hypothetical protein

2.57 (0.008)

S

VVMO6_03566

Hypothetical protein

2.46 (0.043)

S

  1. aNormalized transcript level in the ΔacsR mutant to the wild type as determined by microarray analysis. The presented data include the normalized values <0.55 or >2 with P <0.05.
  2. bCOGs: J, translation, ribosomal structure and biogenesis; L, replication, recombination and repair; V. defense mechanisms; N, cell motility; U, intracellular trafficking, secretion and vesicular transport; C, energy production and conversion; G, carbohydrate transport and metabolism; E, amino acid transport and metabolism; F, nucleotide transport and metabolism; I, lipid transport and metabolism; Q, secondary metabolite biosynthesis, transport and catabolism; R, general function prediction only; S, function unknown.