Table 4 Genotyping of C. psittaci field strains using the AT microarray and comparison with PCR-RFLP and ompA sequencing
Strain ID | Origin | Genotype identification by | ||
|---|---|---|---|---|
PCR-RFLP | ompA sequencing | ArrayTube genotyping* | ||
C1/97 | sheep, Germany, 1997 | C | C | C |
C5/98 | calf, Germany, 1998 | A | A | A-6BC |
C19/98 | sheep, Germany, 1998 | A | A | A-6BC |
DC15 | cattle, Germany, 2001 | A | A | A-6BC |
DC28 | amazon parrot, Germany, 2001 | A | A | A-VS1 |
DC29 | amazon parrot, Germany, 2001 | A | A | A-6BC |
DC32 | pigeon, Germany, 2001 | B | B | B |
Cal-10 | ferret, USA, 1936 | E | E | E |
St04 | chicken, Germany, 2005 | A | A | A-VS1 |
St05 | duck, Germany, 2005 | E | E/B | EB-E30 |
St06 | duck, Germany, 2005 | A | A | A-VS1 |
St07 | duck, Germany, 2005 | E | E/B | EB-E30 |