Primer | Primer sequence 5'-3' direction | PCR product (bp) | Gene/Region | Ref.d |
---|---|---|---|---|
pJB-1.SE | attcgatgcaacgcgaagaaccttacc | ~430 | 16S rDNA | |
p13B.AS | gtgtactaggcccgggaacgtattc | (V3, V4, V9) | [38] | |
bio-HJ-HP-JBS.V3.SE | bio-cctaggcttgacattgaiagaa | ~90 | HP-16S rDNA | |
B-V3.AS | acgacagccatgcagcacct | pyrosequencing | ||
vacA-1.SE | caatcgtgtgggttctggagc | 678 | vacA | |
vacA-3.AS | gccgatatgcaaatgagccgc | [15] | ||
hsp60-1.SE | gctccaagcatcaccaaagacg | 603 | hsp60 | |
hsp60-3.AS | gcggtttgccctctttcatgg | |||
ureI-3.SE | cagcaatgggatttgcgggttaacca | 511 | ureI | |
ureI-4.AS | gatccaagcggttaaaataccctcaatgga | |||
sod-1.SE | gccctgtggcgtttgatttcc | 425 | sodB | |
sod-3.AS | catgctcccacacatccacc | |||
ureA-1.SE | gcggctgaattgatgcaagaagg | 350 | ureA | |
ureA-3M.SE | gctcgcaatgtctaagcgtttaccgaa | |||
cagA-2.SE | gaaatttggggatcagcgttacc | 180 | cagA | |
cagA-3.AS | tcctgcaaaagattgtttggcaga | |||
VAI-F | atggaaatacaacaaacacac | 259/286 | vacA s1/s2 | |
VAI-R | ctgcttgaatgcgccaaac | [26] | ||
VAG-F | caatctgtccaatcaagcgag | 567/642 | vacA m1/m2 | |
VAG-R | gcgtcaaaataattccaagg | |||
M13a-SeqS.SE | cgttgtaaaacgacggccagtga-ccctttgtgcaaaaatcgtt | 381 | vacA gene, | |
SeqS.AS | cccarcctccatcaatctt | signal region | ||
M13a-SeqVac.SE | cgttgtaaaacgacggccagtga-gccaattcaayggcaattct | 803 | vacA RHM | pr. |
SeqVac.AS | cgcttgattggacagattga | and i-region | ||
M13a-SeqM.SE | cgttgtaaaacgacggccagtga-agtcrttgatgggccttttg | 717b | vacA gene, midregion | |
IL1B-511F1.SE | tatgttctctgccccagcca | 133 | IL1B-511 | |
bio-IL1B-511R1.AS | bio-aatagccctccctgtctgtattga | rs16944c | pr. | |
Seq-IL1B-511.S1 | gcaattgacagagagct | pyrosequencing | ||
bio-IL1B-31F1.SE | bio-atttctcagcctcctacttctgc | 76 | IL1B-31 | |
IL1B-31R1.AS | aagaggtttggtatctgccagttt | rs1143627c | pr. | |
Seq-IL1B-31.S1 | ccctcgctgtttttat | pyrosequencing | ||
hIL1B+3954.AS | cggagcgtgcagttcagtgat | 152 | IL1B +3954 | |
bio-IL1B+3954.SE | bio-aattttgccgcctcgcctca | rs1143634c | [27] | |
IL1B+3954 | cgttatcccatgtgtc | pyrosequencing | ||
IFNGR1.SE | ggtgacggaagtgacgtaagg | 106 | IFNGR1-56 | |
bio-IFNGR1.AS | gaggagagccatgctgctac | rs2234711c | pr. | |
Seq-IFNGR1.S2 | gccggggctggaggg | pyrosequencing | ||
IL1RNF1.SE | cccctcagcaacactcc | 270/356/442 | IL1RN 86bp | [17] |
IL1RNR1.AS | ggtcagaagggcagaga | /528/614 | VNTR/Intron 2 |