Locus name | "MIRU" alias [8] | "ETR" alias [7] | Other alias | Reference | TR location on H37Rv genome | Expected length in H37Rv (copy number) | Expected length in CDC1551 (copy number) | Expected length in M bovis AF2122 (copy number) | N° of strains | Size range observed (copy number) | N° of alleles observed | Polymorphism index | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H37Rv_0024_18 bp | Mtub01 | This report | 24648 | 328 (10) | 310 (9) | 310 (9) | 92 | 274–328 bp (7–10) | 4 | 0.48 | |||
H37Rv_0079_9 bp | Mtub02 | This report | 79503 | 230 (6) | 239 (7) | 239 (7) | 92 | 221–275 bp (5–11) | 7 | 0.76 | |||
H37Rv_0154_53 bp | MIRU2 | [8] | 154111 | 508 (2) | 508 (2) | 508 (2) | 92 | 455–561 bp (1–3) | 3 | 0.09 | |||
H37Rv_0424_51 bp | Mtub04 | This report | 424010 | 269 (2.6) | 371 (4.6) | 269 (2.6) | 28 | 218 – 320 (1.6–3.6) | 3 | 0.52 | |||
H37Rv_0531_15 bp | MPTR-A | [7] | 531430 | 328 (16) | 328 (16) | 328 (16) | 48 | (15–17) | 3 | 0.23 | |||
H37Rv_0577_58 bp | ETR-C | [8] | 577172 | 346 (4) | 288 (3) | 404 (5) | 92 | 230–404 bp (2–5) | 4 | 0.63 | |||
H37Rv_0580_77 bp | MIRU4 | ETR-D | [7] | 580546 | 353 (3.3) | 330 (3) | 483 (5) | 92 | 253–715 bp (2–8) | 7 | 0.35 | ||
H37Rv_0802_54 bp | MIRU40 | [8] | 802194 | 199 (1) | 415 (5) | 253 (2) | 92 | 199–469 bp (1–6) | 5 | 0.71 | |||
H37Rv_0959_53 bp | MIRU10 | [8] | 959868 | 643 (3) | 750 (5) | 590 (2) | 92 | 537–1014 bp (1–10) | 9 | 0.76 | |||
H37Rv_1121_15 bp | Mtub12 | This report | 1121658 | 215 (4) | 230 (5) | 215 (4) | 92 | 200–230 bp (3–5) | 3 | 0.19 | |||
H37Rv_1443_56 bp | Mtub16 | This report | 1443417 | 291 (1) | 347 (2) | 347 (2) | 11 | 291–515 (1–5) | 3 | 0.56 | |||
H37Rv_1451_57 bp | QUB-1451c | [9] | 1451778 | 305 (3.8) | 305 (3.8) | 305 (3.8) | 56 | (2–4) (bovis) | 2 | 0.12 | |||
H37Rv_1612_21 bp | QUB-23 | [11] | 1612529 | 141 (5) | 162 (6) | 162 (6) | 20 | 141–203 (5–8) | 3 | 0.18 | |||
H37Rv_1644_53 bp | MIRU16 | [8] | 1644026 | 671 (2) | 724 (3) | 671 (2) | 92 | 618–777 bp (1–4) | 4 | 0.59 | |||
H37Rv_1895_57 bp | QUB-1895 | [9] | 1895344 | 319 (4) | 205 (2) | 319 (4) | 56 | (2–4) (bovis) | 3 | 0.35 | |||
H37Rv_1955_57 bp | Mtub21 | This report | 1955580 | 206 (2) | 263 (3) | 263 (3) | 92 | 149–491 bp (1–7) | 7 | 0.76 | |||
H37Rv_1982_78 bp | QUB-18 | [11] | 1982873 | 621 (5) | 777 (7) | 465 (3) | 24 | 387–1167 (2–12) | 9 | 0.74 | |||
H37Rv_2059_77 bp | MIRU20 | [8] | 2059429 | 591 (2) | 591 (2) | 591 (2) | 53 | (1–2) | 2 | 0.29 | |||
H37Rv_2074_56 bp* | Mtub24 | This report | 2074431 | 805 (3.6) | 693 (1.6) | 693 (1.6) | 44 | 637–749 (0.6–2.6) | 3 | 0.52 | |||
H37Rv_2163_a_69 bp | QUB-11a | pUCD1 | [11] | 2163607 | 305 (3) | 581 (7) | 788 (10) | 92 | 305–1832 bp (3–26) | 15 | 0.88 | ||
H37Rv_2163_b_69 bp | QUB-11b | pUCD1 | [11] | 2163729 | 412 (5) | 274 (3) | 343 (4) | 52 | 136–826 (1–11) | 8 | 0.82 | ||
H37Rv_2165_75 pb | ETR-A | [7] | 2165223 | 397 (3) | 322 (2) | 847 (9) | 92 | 322–847 bp (2–9) | 8 | 0.73 | |||
H37Rv_2347_57 bp | Mtub29 | This report | 2347393 | 350 (4) | 292 (3) | 293 (3) | 92 | 236–350 bp (2–4) | 3 | 0.55 | |||
H37Rv_2401_58 bp | Mtub30 | This report | 2401815 | 319 (2) | 435 (4) | 435 (4) | 92 | 261–435 bp (1–4) | 3 | 0.55 | |||
H37Rv_2461_57 bp | ETR-B | [7] | 2461279 | 292 (3) | 235 (2) | 406 (5) | 92 | 178–406 bp (1–5) | 6 | 0.51 | |||
H37Rv_2531_53 bp | MIRU23 | [8] | 2531560 | 873 (6) | 820 (5) | 767 (4) | 92 | 608–979 bp (1–8) | 7 | 0.60 | |||
H37RV_2387_54 bp | MIRU24 | [8] | 2684427 | 447 (1) | 447 (1) | 447 (1) | 53 | (1–2) | 2 | 0.24 | |||
H37Rv_2990_55 bp | Mtub31 | This report | 2990582 | 257 (2) | 312 (3) | 312 (3) | 49 | 202–312 bp (1–3) | 3 | 0.15 | |||
H37Rv_2996_51 bp | MIRU26 | [8] | 2996002 | 614 (3) | 716 (5) | 716 (5) | 57 | 563–818 (2–7) | 5 | 0.61 | |||
H37Rv_3006_53 bp | MIRU27 | QUB-5 | [8] | 3006875 | 657 (3) | 657 (3) | 657 (3) | 92 | 551–710 bp (1–4) | 4 | 0.25 | ||
H37Rv_3171_54 bp | Mtub34 | This report | 3171465 | 279 (3) | 225 (2) | 279 (3) | 11 | 171–225 (1–2) | 2 | 0.3 | |||
H37Rv_3192_53 bp | MIRU31 | ETR-E | [7] | 3192168 | 651 (3) | 651 (3) | 651 (3) | 92 | 545–810 bp (1–6) | 6 | 0.67 | ||
H37Rv_3232_56 bp | QUB-3232 | [9] | 3232649 | 591 (3) | 760 (6) | 703 (5) | 56 | (4–22) (bovis) | 10 | 0.65 | |||
H37Rv_3239_79 bp | ETR-F | [7] | 3239469 | 476 (2.8) | 476 (2.8) | 421 (2.1) | 48 | (1–3) | 3 | 0.49 | |||
H37Rv_3336_59 bp | QUB-3336 | [9] | 3336499 | 407 (5) | 466 (6) | 289 (3) | 56 | (3–21) (bovis) | 8 | 0.55 | |||
H37Rv_3663_63 bp** | Mtub38 | This report | 3663751 | 373 (2.7) | 310 (1.7) | 310 (1.7) | 92 | 247–400 bp (0.7–3.1) | 5 | 0.35 | |||
H37Rv_3690_58 bp* | Mtub39 | This report | 3690947 | 341 (2.6)* | 397 (3.6) | 341 (2.6) | 92 | 247–1349 bp (1–20)* | 11 | 0.64 | |||
H37Rv_4052_111 bp | QUB-26 | [11] | 4052969 | 708 (5) | 819 (6) | 597 (4) | 100 | (4–14) (bovis) | 5 | 0.41 | |||
H37Rv_4156_59 bp | QUB-4156c | [9] | 4156797 | 224 (2) | 283 (3) | 165 (1) | 52 | 106–283 (0–3) | 4 | 0.69 | |||
H37Rv_4348_53 bp | MIRU39 | [8] | 4348401 | 646 (2) | 646 (2) | 646 (2) | 92 | 593–699 bp (1–3) | 3 | 0.31 |