Genomes-based phylogeny of the genus Xanthomonas

BMC Microbiology

Table 2 Similarity matrix between genomes

Genome	XccA	XccB	Xca7	Xci3	Xfa1	Xfa0	Xeu8	XamC	XvvN	XvmN	Xvm0	XooK	XooM	XooP	XocB	XalG
XccA	100.00%
XccB	99.08%	100.00%
Xca7	98.17%	98.15%	100.00%
Xci3	87.81%	87.80%	87.88%	100.00%
Xfa1	87.85%	87.77%	87.84%	97.63%	100.00%
Xfa0	87.81%	87.73%	87.79%	97.59%	99.51%	100.00%
Xeu8	87.93%	87.85%	87.92%	95.97%	95.82%	95.77%	100.00%
XamC	87.97%	87.89%	87.96%	95.38%	95.25%	95.22%	95.80%	100.00%
XvvN	87.54%	87.47%	87.52%	92.48%	92.44%	92.39%	92.40%	92.11%	100.00%
XvmN	97.60%	87.54%	87.59%	92.52%	92.47%	92.43%	92.48%	92.14%	99.36%	100.00%
Xvm0	87.51%	87.42%	87.47%	92.44%	92.44%	92.37%	92.39%	92.12%	99.34%	99.97%	100.00%
XooK	87.32%	87.17%	87.31%	92.29%	92.24%	92.21%	92.26%	91.94%	93.51%	93.58%	93.48%	100.00%
XooM	87.36%	87.34%	87.41%	92.31%	92.27%	92.24%	92.30%	91.99%	93.53%	93.59%	93.51%	99.91%	100.00%
XooP	87.43%	87.35%	87.40%	92.32%	92.26%	92.23%	92.29%	91.99%	93.53%	93.58%	93.50%	99.88%	99.85%	100.00%
XocB	87.41%	87.32%	87.39%	92.37%	92.31%	92.27%	92.34%	92.03%	93.57%	93.62%	93.54%	98.78%	98.78%	98.80%	100.00%
XalG	78.52%	78.43%	78.54%	78.47%	78.41%	78.38%	78.44%	78.62%	77.96%	78.04%	77.95%	77.94%	78.02%	78.06%	78.02%	100.00%

The 989 loci employed for phylogenetic inference were used to generate a similarity matrix between genomes. Values between 96-99% of similarity are highlighted in light grey. Values above 99% similarity are in bold.

ISSN: 1471-2180