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Table 1 Genomes used in this study

From: Genomes-based phylogeny of the genus Xanthomonas

(Sub)species

Pathovar

Strain

Abbr.

Caused disease

Database entry

Reference

X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995

campestris

BCCM/LMG 8004 *(1)

Xcc8

Crucifer black rot

NCBI GI:66766352

[43]

X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995

campestris

ATCC 33913T *(2)

XccA

Cabbage black rot

NCBI GI:21166373

[44]

X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995

campestris

B100 *(3)

XccB

Brassica black rot

NCBI GI:188989396

[45]

X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995

armoraciae

756 C *(4)

Xca7

Brassica leaf spot

JCVI CMR org:Xca

Unpublished

X. citri subsp. citri (ex Hasse 1915) Gabriel et al 1989

N/A

306

Xci3

Citrus canker A

NCBI GI:21240774

[44]

X. fuscans subsp. aurantifolii Schaad et al 2007 *(5)

N/A

ICPB 11122

Xfa1

Citrus canker B

NCBI GI:292601741

[11]

X. fuscans subsp. aurantifolii Schaad et al 2007 *(5)

N/A

ICPB10535 *(6)

Xfa0

Citrus canker C

NCBI GI:292606407

[11]

X. euvesicatoria Jones et al 2006

N/A

85-10

Xeu8

Pepper and tomato bacterial spot

NCBI GI:78045556

[46]

X. axonopodis Starr and Garces 1950 emend. Vauterin et al 1995

manihotis

CIO 151 *(7)

XamC

Cassava Bacterial Blight

Not in public databases

Unpublished

X. vasicola Vauterin et al 1995

vasculorum

NCPPB 702 *(8)

XvvN

Sugarcane gumming disease

NCBI GI:257136567

[47]

X. vasicola Vauterin et al 1995

musacearum *(9)

NCPPB 4381 *(10)

XvmN

Banana bacterial wilt

NCBI GI:257136682

[47]

X. vasicola Vauterin et al 1995

musacearum *(9)

unknown

Xvm0

Banana bacterial wilt

JCVI CMR org: ntxv01

Unpublished

X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990

oryzae

KACC 10331*(11)

XooK

Rice bacterial blight

NCBI GI:58579623

[48]

X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990

oryzae

MAFF 311018 *(12)

XooM

Rice bacterial blight

NCBI GI:84621657

[49]

X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990

Oryzae

PXO99A *(13)

XooP

Rice bacterial blight

NCBI GI:188574270

[50]

X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990

oryzicola

BLS 256

XocB

Rice bacterial streak

NCBI GI:94721236

Unpublished

X. albilineans (Ashby 1929) Dowson 1943 emend. van der Mooter and Swings 1990

N/A

GPE PC73 *(14)

XalG

Sugarcane leaf scald

NCBI GI:283472039

[42]

  1. The (Sub)species column contains the accepted name of the bacterium. Alternative names may exist. The listed diseases may be known with different names or in additional hosts. The diseases names and hosts stand as designated in the publication of the genome (rightmost column) or in [8] where unpublished. *(1) Spontaneous rifampicilin-resistant strain derived from NCPPB 1145 (StrainInfo 23435). *(2) Type strain of the species, StrainInfo 23352. *(3) Smr derivative of the wild-type strain DSM 1526 [51], StrainInfo 157307. *(4) Wild-type isolate by Anne Alvarez [52]. *(5) In this study we show that this name should be considered a later heterotypic synonym of X. citri as previously suggested [18, 31]. *(6) IBSF 338, StrainInfo 545646. *(7) CIO, CIAT-ORSTROM (now IRD) Xanthomonas collection, Biotechnology Research Unit, Cali, Colombia [53]. *(8) CFBP 7169 or LMG 8710, StrainInfo 26110. *(10) Isolated from banana by Valentine Aritua, not registered in StrainInfo. *(11) CFBP 7088, StrainInfo 559506. *(12) StrainInfo 373786. *(13) 5-azacytidine-resistant derivative of PXO99, collected by Mew and collaborators [54]. *(14) CFBP 7063, StrainInfo 843129.