From: Quinolone resistance in Escherichia coli from Accra, Ghana
Target gene | Primer | Primer Sequence | Purpose | Reference |
---|---|---|---|---|
gyrA | gyrA12004 | TGC CAG ATG TCC GAG AT | gyrA QRDR amplification | [12] |
 | gyrA11753 | GTA TAA CGC ATT GCC GC |  |  |
parC | EC-PAR-A | CTG AAT GCC AGC GCC AAA TT | parC QRDR amplification | [43] |
 | EC-PAR-B | GCG AAC GAT TTC GGA TCG TC |  |  |
qnrA | qnrA-1A | TTC AGC AAG ATT TCT CA | qnrA detection | [42] |
 | qnrA-1B | GGC AGC ACT ATT ACT CCC AA |  |  |
qnrB | qnrB-CS-1A | CCT GAG CGG CAC TGA ATT TAT | qnrB detection | [42] |
 | qnrB-CS-1B | GTT TGC TGC TCG CCA GTC GA |  |  |
qnrS | qnrS-1A | CAA TCA TAC ATA TCG GCA CC | qnrS detection | [42] |
 | qnr-1B | TCA GGA TAA ACA ACA ATA CCC |  |  |
qepA | qepA-F | GCAGGTC CAGCAGCGGGTAG | qepA detection | [41] |
 | qepA-R | CTTCCTGCCCGAGTATC GTG |  |  |
adk | adkF | ATTCTGCTTGGCGCTCCGGG | MLST | [19] |
 | adkR | CCGTCAACTTTCGCGTATTT |  |  |
fumC | fumCF | TCACAGGTCGCCAGCGCTTC | MLST | [19] |
 | fumCR | GTACGCAGCGAAAAAGATTC |  |  |
gyrB | gyrBF | TCGGCGACACGGATGACGGC | MLST | [19] |
 | gyrBR | ATCAGGCCTTCACGCGCATC |  |  |
icd | icdF | ATGGAAAGTAAAGTAGTTGTTCCGGCACA | MLST | [19] |
 | icdR | GGACGCAGCAGGATCTGTT |  |  |
mdh | mdhF | ATGAAAGTCGCAGTCCTCGGCGCTGCTGGCGG | MLST | [19] |
 | mdhR | TTAACGAACTCCTGCCCCAGAGCGATATCTTTCTT |  |  |
purA | purAF | CGCGCTGATGAAAGAGATGA | MLST | [19] |
 | purAR | CATACGGTAAGCCACGCAGA |  |  |
recA | recAF | CGCATTCGCTTTACCCTGACC | MLST | [19] |
 | recAR | TCGTCGAAATCTACGGACCGGA |  |  |