Genetic relationships among Italian and Mexican maize-rhizosphere Burkholderia cepacia complex (BCC) populations belonging to Burkholderia cenocepaciaIIIB and BCC6 group

Table 2 Restriction types (RTs) and eBURST grouping of Italian and Mexican maize-rhizosphere BCC6 isolates.

RT	Isolate name^a	RFLP type^b	IIIB-specific PCR^c	Alleles at the following loci
				recA	gyrB	fliC	cepIR	dsbA
Group 1 (RT-104-complex)
20	MexII-195	AD	+	14	9	5	4	2
26 (3)^d	MCII-88^e	AD	+	14	1	3	2	1
34 (8)^d	MVP-C2-23^e	AD	-	14	9	2	5	1
35 (2)^d	MVP-C2-60^e	AD	+	14	8	2	5	1
37 (2)^d	MDII-107r^e	AD	-	14	4	2	5	1
40	MVP-C2-21	AD	-	14	9	2	5	2
54	MexII-989	AD	+	14	4	5	4	1
55 (2)^d	MDIII-T18^e	AD	+	14	8	3	4	1
56	MexII-992	AD	-	14	8	2	1	2
58	MexII-1011	AD	-	14	9	1	6	1
59 (2)^d	MexII-1005^e	AD	+	14	9	1	3	2
60 (2)^d	MexII-983^e	AD	-	14	9	5	3	1
72	MCII-179	AD	+	14	1	4	2	1
77	MCII-13	AD	+	14	1	4	2	1
79 (2)^d	MVP-C2-81^e	AD	-	14	9	2	3	1
81 (6)^d	MVP-C1-16^e	AD	-	14	8	2	4	1
82 (3)^d	MVP-C2-2^e	AD	-	14	9	2	4	1
84	MDIII-P152	AD	-	14	9	3	4	2
85	MDIII-P253	AD	+	14	4	3	4	1
86	MDIII-P292	AD	-	14	8	5	1	1
87	MVP-C1-15	AD	-	14	8	2	4	2
88	MDIII-P3	AD	+	14	9	1	4	1
89	MCII-23	AD	+	14	2	2	5	1
95 (2)^d	MCII-35^e	AD	+	14	1	2	2	2
96	MCII-134	AD	+	14	1	3	2	2
97	MVP-C2-1	AD	+	14	7	2	4	2
98 (2)^d	MDII-125r^e	AD	+	14	10	2	4	1
99	MDII-103r	AD	-	14	9	3	4	1
104*	MDII-105r	AD	+	14	4	2	4	1
104*	MVP-C1-79	AD	-	14	4	2	4	1
106 (2)^d	MDII-144p^e	AD	+	14	4	2	4	2
110	MVP-C2-84	AD	-	14	4	2	2	2
111	MVP-C2-67	AD	-	14	8	2	1	1
113	MDII-110r	AD	-	14	10	2	5	1
116	MDIII-T258	AD	+	14	4	2	1	1
122	MexII-858	AD	-	14	9	2	3	2
Singletons
19	MexII-125	AD	-	14	9	6	1	1
38	MDIII-T109	AD	+	14	9	4	1	2
61	MexII-831	AD	-	14	10	3	10	1
76	MCII-182	AD	+	14	1	5	6	1

^{a, b, c, *}see legend Table 1.
^dIn parenthesis, no. of isolates with same RT. RT26 (MCII-88, MCIII-CA-1, MCIII-CC-35); RT34 (MVP-C2-23, MVP-C2-53, MVP-C2-57, MVP-C2-63, MVP-C2-64, MVP-C2-76, MVP-C2-82, MDII-116r); RT35 (MVP-C2-60, MVP-C2-62); RT 37 (MDII-107r, MVP-C2-58); RT55 (MDIII-T18, MexII-829); RT59 (MexII-1005, MexII-1006); RT60 (MexII-983, MexII-984); RT79 (MVP-C2-81, MVP-C2-90); RT81 (MVP-C1-16, MVP-C1-21, MVP-C1-22, MVP-C1-78, MVP-C2-18, MDIII-P41); RT82 (MVP-C2-2, MDIII-B659, MDIII-P115); RT95 (MCII-35, MCII-36); RT98 (MDII-125r, MVP-C2-121p); RT106 (MDII-144p, MDIII-T301).
^erepresentative isolate of RT.

ISSN: 1471-2180