Locus | Repeat (bp) | C. difficile630a | P142 | |||
---|---|---|---|---|---|---|
 |  | Location | Copy number | No. alleles | Simpson's allelic diversity | Typeability (%) |
C6cdb | 6 | 3239736-855 | 16 | 32 | 0.96 | 98 |
CDR4b | 6 | 755721-942 | 37 | 38 | 0.96 | 97 |
CDR49b | 7 | 3688632-750 | 17 | 22 | 0.94 | 99 |
CDR60b, c | 17 | 677132-413 | 265 | 20 | 0.94 | 92 |
CDR9b | 8 | 664660-747 | 6 | 20 | 0.93 | 83 |
CDR5b | 8 | 692929-3017 | 11 | 13 | 0.9 | 70 |
CDR48b | 7 | 167124-172 | 7 | 10 | 0.84 | 99 |
cd7c | 7 | 941339-465 | 128 | 10 | 0.83 | 97 |
cd5c | 17-19 | 828221-372 | 150 | 15 | 0.8 | 96 |
cd6c | 42 | 917090-173 | 84 | 10 | 0.78 | 99 |
CDR59b,c | 11 | 771338-403 | 167 | 11 | 0.76 | 99 |
cd25c | 12 | 3748418-65 | 57 | 6 | 0.71 | 98 |
F3cd b | 3 | 1954915-935 | 7 | 5 | 0.7 | 100 |
H9cd b | 3 | 4116072-110 | 13 | 7 | 0.62 | 100 |
cd12 | 12 | 1578610-45 | 3 | 4 | 0.61 | 100 |
cd22 | 15 | 3035898-942 | 2 | 5 | 0.58 | 99 |
cd20 | 17 | 2913124-157 | 2 | 3 | 0.56 | 79 |
cd19 | 18 | 2724077-166 | 5 | 4 | 0.56 | 100 |
cd27 | 15 | 1662349-63 | 2 | 5 | 0.55 | 100 |
cd31 | 17 | 4261467-517 | 3 | 3 | 0.54 | 100 |
cd10 | 6 | 1366501-24 | 4 | 2 | 0.5 | 100 |
cd16 | 11 | 2004175-85 | 1 | 2 | 0.5 | 98 |
cd41 | 18 | 857052-105 | 3 | 3 | 0.49 | 100 |
cd29 | 16 | 2025983-6014 | 2 | 2 | 0.49 | 100 |
cd8 | 8 | 1216864-79 | 2 | 5 | 0.42 | 77 |
cd23 | 21 | 3157267-350 | 4 | 5 | 0.41 | 100 |
cd17 | 8 | 2062186-201 | 2 | 2 | 0.35 | 100 |
cd30 | 15 | 3095446-75 | 2 | 2 | 0.33 | 100 |
cd15 | 5 | 1909382-6 | 2 | 3 | 0.32 | 100 |
cd14 | 19 | 1908272-309 | 2 | 2 | 0.3 | 100 |
cd39 | 5 | 1021318 | 0 | 9 | 0.28 | 100 |
cd4 | 15 | 667998-8057 | 3 | 3 | 0.27 | 100 |
cd21 | 6 | 2982766-787 | 8 | 3 | 0.27 | 100 |
cd2 | 14 | 463809-36 | 2 | 2 | 0.25 | 100 |
cd40 | 5 | 209313-27 | 3 | 3 | 0.22 | 100 |
cd9 | 3 | 1268365-77 | 4 | 2 | 0.22 | 100 |
cd42 | 4 | 1818181-92 | 3 | 4 | 0.21 | 99 |
cd28 | 8 | 1821467-82 | 2 | 4 | 0.2 | 79 |
cd18 | 4 | 2611912-27 | 4 | 4 | 0.16 | 100 |
cd33 | 24 | 1563736-83 | 2 | 2 | 0.12 | 100 |
cd13 | 23 | 1833582-673 | 4 | 4 | 0.11 | 100 |
cd36 | 3 | 4231072-84 | 2 | 3 | 0.11 | 100 |
cd24 | 10 | 3621903-22 | 2 | 2 | 0.09 | 100 |
cd32 | 6 | 339734-45 | 2 | 2 | 0.06 | 100 |
cd35 | 6 | 3925113-24 | 2 | 2 | 0.03 | 96 |
cd34 | 6 | 2033446-57 | 2 | 2 | 0.03 | 99 |
cd38 | 7 | 811821-34 | 2 | 2 | 0.03 | 100 |