From: Comparative fecal metagenomics unveils unique functional capacity of the swine gut
Metagenome | Sobs | Chao1 | ACE | Jackknife | Shannon | Shannon (non-parametric) | Simpson | boneh | coverage |
---|---|---|---|---|---|---|---|---|---|
Pig Feces GS20 | 52 | 77.09 (61.24-120.12) | 116.05 (89.07-162.68) | 76.88 (62.74-91.02) | 3.17 (3.03-3.32) | 3.36 | 0.07 (0.05-0.08) | 10.34 | 0.91 |
Pig Feces FLX | 71 | 113.86 (86.42-190.10) | 125.60 (103.78-161.95) | 119.78 (92.49-147.06) | 3.19 (3.10-3.29) | 3.27 | 0.08 (0.07-0.09) | 5.84 | 0.97 |
Cow Rumen | 40 | 63.00 (48.33-103.51) | 168.17 (120.97-242.89) | 63.63 (49.92-77.33) | 2.56 (2.35-2.77) | 2.86 | 0.15 (0.11-0.19) | 10.58 | 0.88 |
Chicken Cecum | 37 | 47.11 (39.89-72.43) | 68.02 (52.45-99.29) | 51.00 (40.63-61.37) | 2.25 (2.11-2.39) | 2.36 | 0.20 (0.17-0.23) | 5.58 | 0.97 |
Human In-A | 20 | 33.75 (23.40-75.55) | 62.23 (41.01-104.88) | 32.94 (22.19-43.70) | 2.52 (2.25-2.79) | 2.84 | 0.10 (0.06-0.15) | 5.05 | 0.81 |
Human In-B | 10 | 20.50 (12.03-64.19) | 27.79 (13.32-105.26) | 23.03 (10.30-35.76) | 0.84 (0.50-1.17) | 1.15 | 0.68 (0.53-0.82) | 3.02 | 0.90 |
Human In-D | 26 | 32.00 (27.33-53.10) | 34.06 (28.41-52.93) | 35.00 (26.68-43.32) | 2.97 (2.80-3.13) | 3.16 | 0.05 (0.04-0.07) | 4.95 | 0.90 |
Human In-E | 18 | 22.20 (18.79-40.34) | 26.41 (20.24-49.62) | 25.00 (17.67-32.33) | 1.11 (0.88-1.34) | 1.26 | 0.60 (0.51-0.69) | 3.72 | 0.96 |
Human In-M | 26 | 46.00 (32.02-92.48) | 80.76 (54.86-129.91) | 43.95 (31.51-56.39) | 2.97 (2.72-3.22) | 3.42 | 0.05 (0.02-0.08) | 7.34 | 0.69 |
Human In-R | 21 | 23.50 (21.41-36.27) | 26.77 (22.44-44.13) | 27.00 (20.21-33.79) | 2.57 (2.38-2.76) | 2.72 | 0.10 (0.07-0.13) | 2.83 | 0.87 |
Human F1-S | 22 | 31.00 (24.00-62.45) | 39.21 (29.33-62.40) | 31.00 (22.68-39.32) | 2.68 (2.49-2.87) | 2.85 | 0.08 (0.06-0.10) | 4.30 | 0.90 |
Human F1-T | 37 | 64.14 (46.04-118.51) | 109.84 (79.72-161.17) | 66.22 (47.95-84.48) | 3.05 (2.83-3.26) | 3.36 | 0.07 (0.04-0.10) | 9.39 | 0.82 |
Human F1-U | 17 | 20.75 (17.64-39.02) | 21.96 (18.14-38.53) | 23.00 (16.21-29.79) | 2.30 (2.04-2.56) | 2.49 | 0.15 (0.08-0.21) | 3.22 | 0.91 |
Human F2-V | 37 | 46.10 (39.59-68.96) | 48.59 (41.00-70.52) | 51.00 (40.63-61.37) | 3.07 (2.89-3.26) | 3.29 | 0.07 (0.05-0.09) | 7.64 | 0.87 |
Human F2-W | 25 | 36.00 (27.88-66.94) | 55.50 (39.11-90.92) | 37.00 (27.40-46.60) | 2.72 (2.50-2.93) | 2.96 | 0.08 (0.06-0.11) | 5.85 | 0.86 |
Human F2-X | 19 | 21.00 (19.29-32.96) | 22.80 (19.83-36.32) | 24.00 (17.80-30.20) | 2.57 (2.38-2.76) | 2.72 | 0.09 (0.06-0.12) | 3.06 | 0.94 |
Human F2-Y | 27 | 40.20 (30.44-77.60) | 41.54 (31.66-72.36) | 39.78 (29.54-50.01) | 2.87 (2.67-3.08) | 3.10 | 0.07 (0.05-0.09) | 5.82 | 0.87 |
Mouse Cecum | 14 | 36.50 (19.23-110.77) | 41.22 (20.35-130.67) | 39.09 (19.22-58.95) | 2.18 (1.78-2.58) | 2.69 | 0.15 (0.04-0.25) | 4.13 | 0.67 |
Termite Gut | 13 | 27.00 (15.92-80.11) | 30.75 (16.84-95.03) | 29.19 (14.56-43.82) | 2.05 (1.72-2.38) | 2.38 | 0.16 (0.09-0.23) | 3.39 | 0.79 |
Fish gut | 14 | 19.00 (14.86-42.91) | 20.45 (15.44-42.93) | 20.00 (13.21-26.79) | 2.29 (2.05-2.54) | 2.50 | 0.11 (0.07-0.15) | 3.71 | 0.87 |
Pig Feces Total | 91 | 127.25 (105.56-181.27) | 184.42 (150.70-237.20) | 127.57 (108.75-146.39) | 3.15 (3.11-3.20) | 3.19 | 0.06 (0.06-0.07) | 0.34 | 0.99 |
Human Infant Total | 59 | 80.00 (66.47-118.05) | 83.37 (69.43-115.92) | 82.03 (68.30-95.75) | 2.66 (2.52-2.79) | 2.78 | 0.17 (0.14-0.20) | 1.25 | 0.96 |
Human Adult Total | 72 | 89.00 (77.34-126.16) | 85.74 (77.28-107.71) | 89.60 (77.72-101.48) | 3.35 (3.30-3.40) | 3.39 | 0.05 (0.04-0.05) | 0.37 | 0.99 |