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Table 1 Strains and plasmids used in this study

From: Genome-wide investigation and functional characterization of the β-ketoadipate pathway in the nitrogen-fixing and root-associated bacterium Pseudomonas stutzeriA1501

Strains or plasmids

Relevant characteristic(s)a

Source or reference

Strains

  

P. stutzeri

  

A1501

Wild type, Chinese culture CGMCC 0351, Ben++, Cat++, 4HBA+

[22]

A1601

A1501 benR::pK18mob ΔbenR, Ben-, Cat++, 4HBA+

this study

A1602

A1501 pcaR::pK18mob ΔpcaR, Ben-, Cat-, 4HBA-

this study

A1603

A1501 pcaD::pK18mob ΔpcaD, Ben-, Cat-, 4HBA-

this study

A1608

A1601 harboring complement plasmid pLbenR

this study

A1609

A1602 harboring complement plasmid pLpcaR

this study

A1610

A1603 harboring complement plasmid pLpcaD

this study

Plasmids

  

pK18mob

Kmr; oriColE1 Mob+ lacZα+, used for directed insertional disruption

[45]

pRK2013

Kmr; Tra+, oriColE1

[46]

pLAFR3

Tcr; Tra-, Mob+, cos, RK2 replicon

[47]

pKbenR

Kmr; 293 bp EcoR I-Hind III fragment containing part of benR in pK18mob

this study

pKpcaR

Kmr; 299 bp EcoR I-Hind III fragment containing part of pcaR in pK18mob

this study

pKpcaD

Kmr; 361 bp EcoR I-Hind III fragment containing part of pcaD in pK18mob

this study

pLbenR

Tcr; 1041 bp EcoR I-Hind III fragment containing benR with its native promoter in pLAFR3

this study

pLpcaR

Tcr; 1457 bp EcoR I-Hind III fragment containing pcaR with its native promoter in pLAFR3

this study

pLpcaD

Tcr; 820 bp EcoR I-Hind III fragment containing pcaD with the lac promoter in pLAFR3

this study

  1. a Ben++, good growth on benzoate; Cat++, good growth on catechol; 4HBA+, weak growth on 4-hydroxybenzoate; Ben-, no growth on benzoate; Cat-, no growth on catechol; 4HBA-, no growth on 4-hydroxybenzoate; Kmr, kanamycin resistant; Tcr, tetracycline resistant.