Table 2 Extra protein motifs in mycobacterial rhomboids
From: Rhomboid homologs in mycobacteria: insights from phylogeny and genomic analysis
Species/strain | Rhomboid | Number of aTMHs | TMH with active Site | Extra motif | E-value | Target signal |
|---|---|---|---|---|---|---|
bH37Rv | Rv0110 | 7 | 4 & 6 | DUF17511 | 0.27 | Mitochondrial |
| Â | Â | Â | Â | Siva2 | 0.68 | Â |
| Â | Â | Â | Â | Zf-B_box3 | 0.00021 | Â |
M. marinum | MMAR_0300 | 7 | 4 & 6 | Zf-B_box | 0.00012 | Other |
| Â | Â | Â | Â | FixQ4 | 0.016 | Â |
M. ulcerans | MUL_4822 | 7 | 4 & 6 | EcsB5 | 0.17 | Mitochondrial |
cM. sp Jls | Mjls_5528 | 7 | 4 & 6 | IBR6 | 0.301 | Other |
| Â | Â | Â | Â | Zf-B_box | 0.013 | Â |
| Â | Â | Â | Â | Dynactin p627 | 0.24 | Â |
| Â | Â | Â | Â | Tim178 | 0.36 | Â |
M. vanbaalenii | Mvan_5753 | 7 | 4 & 6 | Zf-B_box | 0.0044 | Other |
| Â | Â | Â | Â | Dynactin p62 | 0.11 | Â |
| Â | Â | Â | Â | DUF1751 | 0.028 | Â |
M. gilvum | Mflv_1071 | 7 | 4 & 6 | Zf-B_box | 0.015 | Other |
| Â | Â | Â | Â | DUF1751 | 0.02 | Â |
M. smegmatis | MSMEG_5036 | 7 | 4 & 6 | - | Â | Mitochondrial |
M. abscessus | MAB_0026 | 7 | 4 & 6 | Zf-B_box | 0.0064 | Other |
H37Rv | Rv1337 | 6 | 4 & 6 | CBM_19 | 0.17 | Mitochondrial |
M. marinum | MMAR_4059 | 6 | 4 & 6 | C_GCAxxG_C_C10 | 0.0062 | Secretory |
M. avium | MAV_1554 | 6 | 4 & 6 | C_GCAxxG_C_C | 0.0099 | Secretory |
M. leprae | ML1171 | 6 | 4 & 6 | C_GCAxxG_C_C | 0.031 | Other |
M. abscessus | MAB_1481 | 6 | 4 & 6 | - | Â | Other |
M. smegamatis | MSMEG_4904 | 5 | 3 & 5 | C_GCAxxG_C_C | 0.025 | Secretory |
M. sp Jls | Mjls_3833 | 5 | 3 & 5 | DUF215411 | 0.6 | Secretory |
M. vanbaalenii | Mvan_4290 | 5 | 3 & 5 | - | Â | Secretory |
M. gilvum | Mflv_2355 | 5 | 3 & 5 | - | Â | Secretory |