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Table 3 Primers.

From: Fibronectin-binding protein B variation in Staphylococcus aureus

Flanking primers

 

pfnbB Adom F

CCGGGATCC AAGAAAACACAAATTGGGAGC

pfnbB Adom R

CCGGGATCC ACATGAATAGAATCTTCTTCAG

pfnbA Adom F

CCGAAGCTT GTGAAAAACAATCTTAGGTAC

pfnbA Adom R

CCGGGATCC TATCAATAGCTGATGAATCCG

Type-specific probe primers

 

pfnbB N3 I F

CTGGTCAAGTAACTAAAGG

pfnbB N3 I R

GTATAATAATAGTTATAATATC

pfnbB N3 II F

ACTGGTCAAGTAACATCTG

pfnbB N3 II R

GTAGTATTTATGATATCCTGA

pfnbB N3 III F

TAAAGGTGGATTGTATACAG

pfnbB N3 III R

TAATAGTAATAACCGTAATTAG

pfnbB N3 IV F

ACTGGTCAAGTAACATCTG

pfnbB N3 IVR

AGTAATAGTTATAATAACCTTG

pfnbB N3 V F

CTGGTCAAGTAACATCTGG

pfnbB N3 V R

GGATAATATGGGTAATAATAGT

pfnbB N3 VI F

GCTAATAAGCCAACAGTCAAAG

pfnbB N3 VI R

CTCGTATATCCAGTTCAATTAACTTG

pfnbB N3 VII F

ATATAAACACATTGGTTCAGATG

pfnbB N3 VII R

TCTCCACTGGAGGCTCAGATTTAATGTC

pQE30 vector primers

 

pfnbBpQE I F

GGGGGATCC GGTACAGATGTAACAAATAAAG

pfnbBpQE I R

AATCCCGGG TTACTTTAGTTTATCTTTGCCG

pfnbBpQE II F

GGGGGATCC GGTACAGATGTAACAAATAAAG

pfnbBpQE II R

GCGCCCGGG TTATTTGGTTTATCTTTACCATCG

pfnbBpQE III F

CCTGGATCC GGTACAGATGTAACAAGTAAAGTG

pfnbBpQE III R

AATCCCGGG TTAATTTGGCTTATCTTTACCGTCG

pfnbBpQE IV F

CCTGGATCC GGTACAGATGTAACAAATAAAGTG

pfnbBpQE IV R

ATTCCCGGG TTAATTTGGCTTATCTTTGCCGTC

pfnbBpQE V F

TAAGGATCC GGTACAGATGTAACAAGTAAAG

pfnbBpQE V R

ATTCCCGGG TTAATTTGGTTTATCTTTACCGTCG

pfnbBpQE VI F

AATGGATCC GGCTCAGATGTAACAAGTAAAG

pfnbBpQE VI R

TCTCCCGGG TTAATTGGGCTTATCTTTGCCGT

pfnbBpQE VII F

CTAGGATCC GGTACAGATGTAACAAGTAAAG

pfnbBpQE VII R

AATCCCGGG TTTCTTCGATTGTACCATTC

  1. * restriction endonuclease sites are italicised.