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Table 1 InDel markers within the aflatoxin biosynthesis cluster used for fingerprinting Aspergillus species

From: Genetic fingerprinting and aflatoxin production of Aspergillus section Flavi associated with groundnut in eastern Ethiopia

Marker name

Relative position

Forward 5′ → 3′

Reverse 5′ → 3′

Amplicon size range (bp)

Amplicons/sample (mean ± SE)

Number of amplicons

Fingerprint reference to raw data

AFLC01

190–340

CCGACCTCACGACGCATTAT

CCGGCTAGCTTCAACAGACG

127–370

0.80 ± 0.36

6

AFLC01

AFLC02

1367–1521

GGTTGGCGGATTGAGAGGTA

GGAGATCAGCCGAGAAGACA

161–216

1.00 ± 0.00

6

AFLC02 – AFLC14

AFLC03

5738–5868

TCCGCCGAGAGCCATAATAG

GGATGCTGACACCTCGATAG

152–155

1.00 ± 0.00

3

AFLC15

AFLC04

7897–8073

ACAGCTGGCATGCTCCGTAT

ATTGCTGCGCACGACGCTTA

194–199

1.00 ± 0.00

4

AFLC16

AFLC05

11633–11783

GTGGATGGACTGCCACTTAG

AGACCACAGTGAGTGCTTCT

161–195

1.00 ± 0.00

9

AFLC17

AFLC06

12333–12543

GCTGTCCTGGACGGATAGTA

CATCGGTCAACGACGAAGTA

230–232

1.00 ± 0.00

3

AFLC18

AFLC07

12715–12889

GTCAGCAAGAGGAGCCTTCA

GGTCACGGAGATCCTCCATA

160–197

1.00 ± 0.00

3

AFLC03

AFLC08

14001–14235

CGCCAGCACGGAGATCGAAT

CGTCTCCTCAGGCGGTCTAT

243–257

1.00 ± 0.00

5

AFLC20

AFLC09

16162–16331

AACACTCCGCTGCTCAACTA

AACGCTCAGGCAACGTCGAA

131–318

1.00 ± 0.00

7

AFLC04

AFLC10

16315–16498

GACGTTGCCTGAGCGTTAAT

TGACTGGTCGTCGCCAGAAT

135–218

1.00 ± 0.08

9

AFLC21

AFLC11

21671–21862

CTCGACGTAGCGTTGAACAG

AACGCATGGCCAGCTAATCT

157–228

1.00 ± 0.11

5

AFLC22

AFLC12

21895–22149

CGCAAGGAGCTCGACCAATA

TTCAGCTCAGCGACGAGAGT

134–278

1.00 ± 0.19

6

AFLC23

AFLC13

22059–22241

TCGGTTCAATGCTCGAACAC

TCCAACCTTCGGCCTAGTCT

183–194

1.00 ± 0.08

3

AFLC24

AFLC14

22155–22242

GACGCCTCGGCTTGTCAAGA

CTCCAACCTTCGGCCTAGTC

96–121

0.80 ± 0.44

3

AFLC05

AFLC18

62617–62825

GGCAGCCAGACCAAGGAATA

CCTTCTCGTAGCCGCTCATC

230–231

1.00 ± 0.00

2

AFLC13

AFLC19

63261–63509

ACAGGACCGCACGGATCAAT

AGGAGCGGATGTCGAAGTCT

260–270

1.00 ± 0.00

6

AFLC12

AFLC20

67451–67735

GCCTAGCGCTCCATTCTCAG

CCATCGTATCCGGCTCTATC

262–369

1.00 ± 0.11

11

AFLC11

AFLC21

68690–68852

TACCTTACTCCGCTAAGCAG

GCGGTCACCTACCAATGAAT

169–321

1.00 ± 0.19

9

AFLC10

AFLC22

68718–68959

TTCGCAGGAGTGTAGCCAAG

GTTGGAACACGCTCCATAGG

259–269

1.00 ± 0.11

7

AFLC09

AFLC23

72035–72162

GGCGTCAGTGGATTCCGGAT

CGTGGTCCGCAGCAATAGTG

140–156

1.00 ± 0.11

3

AFLC08

AFLC24

73119–73357

GAACGAGATAACGGCTGCAT

ATCAATCCACGGACCGTTGT

260–261

1.00 ± 0.19

2

AFLC06

AFLC25

72652–72811

CAGTGCGACCGGATGGTACA

CGGCTGAACGCGATGACTCT

110–184

0.80 ± 0.39

5

AFLC07

AFLC26a

13627–13702

CGGCGTGGTGCGGTACTAAT

TAATACGCGCCGGCATCTCC

89–95

1.00 ± 0.00

6

AFLC19

  1. SE standard error of the mean
  2. aMarker used only in this study, while the rest adopted from Faustinelli et al. [11]. Marker names in italics, correspond to the labels used in the raw data files of fingerprinting DOI: https://0-doi-org.brum.beds.ac.uk/10.15482/USDA.ADC/1520771