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Table 2 Amino acids frequency and distribution in cleavage site of signal peptide of the predicted secreted proteins in S. lycopersici

From: Prediction of pathogenesis-related secreted proteins from Stemphylium lycopersici

Kinds of

−3

−2

−1

1

2

 

3

Amino acid

No.

pct.(%)

No.

pct.(%)

No.

pct.(%)

No.

pct.(%)

No.

pct.(%)

No.

pct.(%)

A

252

49.32%

72

14.09%

426

83.37%

123

24.07%

29

5.68%

44

8.61%

V

133

26.03%

21

4.11%

0

0.00%

20

3.91%

30

5.87%

47

9.20%

T

48

9.39%

35

6.85%

6

1.17%

28

5.48%

42

8.22%

66

12.92%

S

33

6.46%

104

20.35%

28

5.48%

47

9.20%

34

6.65%

49

9.59%

I

20

3.91%

15

2.94%

0

0.00%

18

3.52%

8

1.57%

48

9.39%

G

11

2.15%

6

1.17%

38

7.44%

23

4.50%

21

4.11%

17

3.33%

C

7

1.37%

10

1.96%

5

0.98%

4

0.78%

5

0.98%

11

2.15%

L

5

0.98%

92

18.00%

0

0.00%

36

7.05%

22

4.31%

51

9.98%

H

1

0.20%

16

3.13%

0

0.00%

42

8.22%

7

1.37%

14

2.74%

R

1

0.20%

6

1.17%

0

0.00%

17

3.33%

5

0.98%

13

2.54%

D

0

0.00%

5

0.98%

0

0.00%

7

1.37%

29

5.68%

17

3.33%

E

0

0.00%

15

2.94%

0

0.00%

9

1.76%

13

2.54%

6

1.17%

F

0

0.00%

33

6.46%

0

0.00%

15

2.94%

9

1.76%

25

4.89%

K

0

0.00%

1

0.20%

0

0.00%

10

1.96%

5

0.98%

6

1.17%

M

0

0.00%

12

2.35%

0

0.00%

7

1.37%

8

1.57%

6

1.17%

N

0

0.00%

21

4.11%

0

0.00%

14

2.74%

26

5.09%

18

3.52%

Q

0

0.00%

30

5.87%

3

0.59%

76

14.87%

18

3.52%

20

3.91%

W

0

0.00%

1

0.20%

0

0.00%

7

1.37%

5

0.98%

6

1.17%

Y

0

0.00%

16

3.13%

0

0.00%

8

1.57%

13

2.54%

10

1.96%

P

0

0.00%

 

0.00%

5

0.98%

0

0.00%

182

35.62%

37

7.24%

  1. pct percentage, A alanine, C cysteine, D aspartic acid, E glutamic acid, F phenylalanine, G glycine, H histidine, I isoleucine, K lysine, L leucine, M methionine, N asparagine, P proline, Q glutamine, R arginine, S serine, T threonine, V valine, W tryptophan, Y tyrosine