Gene or orf | PhaR binding site | USDA110 RPKM | ΔphaR RPKM | Fold changea | Description |
---|---|---|---|---|---|
cyoA (blr0149) | TGCGGCGCAGCA | 22.29 | 77.7 | 3.49 | cytochrome O ubiquinol oxidase subunit II |
phaZ3 (blr0899) | TGCAGTGCAGCA | 32.68 | 89.48 | 2.74 | poly(3-hydroxyalkanoate) depolymerase |
phaZ1 (blr0908) | CGCATCGCAGCA | 129.32 | 542.25 | 4.19 | poly(3-hydroxybutyrate) depolymerase |
rhlE (bll1447) | TGCAGTGCAGAA | 152.94 | 551.69 | 3.61 | dead-box ATP-dependent RNA helicas |
blr2242 | TGCGCCGCAGCA | 66.21 | 190.65 | 2.88 | unknown protein |
bll2363 | TGCGCCGCACAA | 374.44 | 1256.32 | 3.36 | unknown protein |
blr2367 | TGCACCGCAGCA | 55.14 | 347.34 | 6.30 | acetyltransferase |
bll2471 | TGGATCGCACCA | 86.78 | 512.16 | 5.90 | hypothetical protein (Hemerythrin HHE cation binding region) |
bll2537 | CGCGTCGCAGCA | 39.54 | 83.05 | 2.10 | hypothetical protein |
phaP5 (blr2887) | TGCATCGCACAA | 122.86 | 15,882.63 | 129.27 | phasin |
ppc (blr2955) | TGCGCTGCGGCA | 46.27 | 93.71 | 2.03 | PEP carboxylase |
bll3794 | TGCATTGCAGCG | 104.59 | 404.72 | 3.87 | hypothetical protein |
blr4162 | TGCATCGCACCA | 79.46 | 931 | 11.72 | hypothetical protein (cellulose synthase catalytic subunit protein) |
bsr4236 | TGCATTGCAACA | 38.73 | 435.02 | 11.23 | unknown protein |
nifR (blr4486) | TGCAGTGCAGCA | 112.16 | 225.25 | 2.01 | nitrogen regulation protein |
metN (blr4501) | TGCACCGCAACA | 14.42 | 29.08 | 2.02 | probable ABC transporter ATP-binding protein |
bsr4726 | TGCGGTGCACAC | 157.38 | 1402.14 | 8.91 | hypothetical protein |
bll4785 | CGCGCCGCACAA | 90.88 | 279.72 | 3.08 | transcriptional regulatory protein Fis family |
phaP1 (bll5155) | TGCAACGCACAA | 215.67 | 10,738.12 | 49.79 | phasin |
bsr5273 | TGCGGTGCATCA | 45.13 | 222.49 | 4.93 | hypothetical protein |
bll5524 | AGCAGTGCAGCA | 106.54 | 220.06 | 2.07 | hypothetical protein |
blr5525 | AGCAGTGCAGCA | 23.4 | 46.85 | 2.00 | hypothetical protein |
blr5594 | TGCGGCGCACAA | 26.16 | 71.75 | 2.74 | MFS permease |
bll6290 | TGCGGCGGACCA | 146.99 | 458.11 | 3.12 | two-component response regulator |
blr6718 | TGCCATGCAGCA | 42.45 | 111.4 | 2.62 | hypothetical protein |
nirK (blr7089) | TGCGCTGCAACA | 13.49 | 41.36 | 3.07 | respiratory nitrite reductase |
phaP4 (bll7395) | TGCGCTGCACAA | 489.78 | 2956.78 | 6.04 | phasin |
blr7872 | TGCGCTGCAACA | 6.30 | 20.63 | 3.27 | HlyD family secretion protein |