Table 2 Descriptions of the 15 GpSGHV haplotypes (abbreviated by ‘H’) identified in Glossina species from different geographical locations
From: Hytrosavirus genetic diversity and eco-regional spread in Glossina species
Country | Location | Species | Tested flies | Haplotype (No of tested samples occurring in the haplotype) | Total no. of haplotypes within the Glossina species (haplotype name) | ||||
VNTR-1 | VNTR-2 | SGHV009 | SGHV010 | SGHV038 | Â | ||||
Uganda | Tororo | G. pallidipes | 8 | H1(8) | H1(5), H2(1), H3(1), H4(1) | H1(8) | H1(8) | H1(8) | 4(H1, H2, H3, H4) |
Buvuma Island | G. f. fuscipes | 9 | H1(6) | H1(9) | – | – | – | 1(H1) | |
Ethiopia | Arba Minch | G. pallidipes | 8 | H7(8) | H7(8) | H7(8) | H7(8) | H7(8) | 1(H7) |
Kenya | Mwea | G. pallidipes | 5 | H9(1) | H9(5) | H9(2), H15(1) | H9(3) | H9(3) | 2(H9, H15) |
Koibos Soi | G. pallidipes | 8 | – | H10(7), H11(1) | H11(4) | H11(4) | H11(4) | 2(H10, H11) | |
Emsos | G. pallidipes | 8 | – | H11(7), H12(1) | H11(2) | H11(2) | H11(2) | 2(H11, H12) | |
BioRI-KALRO | G. m. morsitans | 16 | H1(12) | H1(16) | – | – | – | 1(H1) | |
Ruma N Park | G. pallidipes | 1 | – | H8(1) | – | H8(1) | H8(1) | 1(H8) | |
Tanzania | Kwamume | G. pallidipes | 1 | H6(1) | H6(1) | – | – | – | 1(H6) |
Kwekivu | G. pallidipes | 8 | H5(4) | H5(8) | H5(6) | H5(6) | H5(6) | 1(H5) | |
G. m. morsitans | 17 | H1(1) | H1(6), H5(11) | H1(4) | H1(4) | H1(4) | 2(H1, H5) | ||
Ikorongo GR | G. swynnertoni | 3 | – | H14(3) | H14(3) | H14(3) | H14(3) | 1(H14) | |
Zambia | Mfuwe | G. pallidipes | 4 | – | H13(4) | H1(4) | H1(4) | H1(4) | 2(H1, H13) |
G. m. morsitans | 9 | H1(7) | H13(6), H1(1), H4(1), H5(1) | – | – | – | 4(H1, H4, H5, H13) | ||
Zimbabwe | Mashumbi | G. pallidipes | 1 | – | H1(1) | – | – | – | 1(H1) |
Gokwe | G. pallidipes | 1 | – | H8(1) | – | – | – | 1(H8) | |
Ruckomechi | G. pallidipes | 8 | H1(3) | H1(7), H7(1) | H1(3) | H1(3) | H1(3) | 2(H1, H7) | |
G. m. morsitans | 14 | H1(12) | H1(13), H5(1) | H1(3) | H1(3) | H1(3) | 2(H1, H5) | ||
Makuti | G. m. morsitans | 8 | – | H1(8) | H1(1) | H1(1) | H1(1) | 1(H1) | |
DRC | Malanga | G. p. palpalis | 4 | H1(3) | H1(4) | – | – | – | 1(H1) |
South Africa | Zululand | G. brevipalpis | 5 | H1(4) | H1(5) | – | – | – | 1(H1) |
G. austeni | 6 | H1(2) | H1(5), H4(1) | – | – | – | 2(H1, H4) | ||