Skip to main content

Table 2 Read and OTU distribution of the samples obtained through next generation sequencing (Illumina), diversity indices (calculated using QIIME workflow) and taxonomical distribution

From: Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

 

GR1

GR3

DB2

Parameters

 Number of reads

627,638

435,940

472,180

 OTUs (97% identity)

7837

12,774

10,617

 Estimated total OTUs (Chao1)

15,448.14

32,314.94

25,135.21

 Shannon diversity index

6.148

4.443

6.369

 Simpson index

0.9452

0.7081

0.95

 Equitability

0.475

0.326

0.476

 Goods coverage

0.9933

0.9819

0.9863

 Archaeal taxa (% Reads)

0.03

0.0002

0.02

 Bacterial taxa (% Reads)

95.41

99.14

97.07

 Unclassified (% Reads)

4.56

0.86

2.91

Number of Archeal taxa detected

 Phylum

2

1

2

 Class

3

1

5

 Family

2

1

3

 Genus

2

1

3

 Genus e

2

2

2

 Genus common in 3 samples

1

  

Number of Bacterial taxa detected

 Phylum

49

46

49

 Class

118

96

116

 Family

213

186

215

 Genus

280

244

285

 Genus common in 3 samples

139

  1. eDetected through clone library