Phylum | 1st collection | 2nd collection | Reference [16] |
---|---|---|---|
Firmicutes | Allobaculum stercoricanis | Bacillus licheniformis | Bacillus megaterium |
Bacillus altitudinis | Bacillus megaterium | Staphylococcus gallinarum | |
Bacillus aryabhattai | Bacillus pumilus | Staphylococcus xylosus | |
Bacillus cereus | Bacillus subtilis | Staphylococcus sciuri | |
Bacillus licheniformis | Bacillus velezensis | Paenibacillus spp. | |
Bacillus megaterium | Brevibacillus laterosporus | Staphylococcus warneri | |
Bacillus pumilus | Enterococcus sp. | Brevibacillus spp. | |
Bacillus safensis | Lactobacillus animalis | Lysinibacillus fusiformis | |
Bacillus subtilis | Lactococcus lactis | streptococcus mitis/oralis | |
Eubacterium cylindroides | Paenibacillus amylolyticus | Enterococcus casseliflavus | |
Eubacterium limosum | Paenibacillus glucanolyticus | Â | |
Lysinibacillus sp. | Paenibacillus pabuli | Â | |
Paenibacillus terrigena | Staphylococcus cohnii | Â | |
Staphylococcus cohnii | Staphylococcus haemolyticus | Â | |
Staphylococcus gallinarum | Staphylococcus kloosii | Â | |
Staphylococcus kloosii | Staphylococcus pettenkoferi | Â | |
Staphylococcus sciuri | Staphylococcus saprophyticus | Â | |
Staphylococcus sp. | Staphylococcus warneri | Â | |
 | Streptococcus salivarius |  | |
Bacteroidetes | Virgibacillus sp. | Bacteroides thetaiotaomicron | Bacteroides ovatus |
Alistipes shahii | Â | Bacteroides thetaiotaomicron | |
Bacteroidaceae bacterium | Â | Bacteroides fragilis | |
Bacteroides fragilis | Â | Bacteroided vulgatus | |
Bacteroides stercorirosoris | Â | Â | |
Bacteroides thetaiotaomicron | Â | Â | |
Bacteroides xylanisolven | Â | Â | |
Proteobacteria | Parabacteroides distasonis | Proteus penneri | Enterobacter cloacae/osurae |
Acinetobacter baumannii | Pseudomonas fragi | Â | |
Citrobacter freundii | Â | Â | |
Enterobacter aerogenes | Â | Â | |
Enterobacter asburiae | Â | Â | |
Enterobacter cloacae | Â | Â | |
Enterobacter hormaechei | Â | Â | |
Klebsiella pneumoniae | Â | Â | |
Klebsiella variicola | Â | Â | |
Lactobacillus plantarum | Â | Â | |
Lonepinella | Â | Â | |
Morganella morganii | Â | Â | |
Pantoea agglomerans | Â | Â | |
Proteus penneri | Â | Â | |
Proteus vulgaris | Â | Â | |
Actinobacteria | Â | Microbacterium sp. | Â |