From: Reconstruction of an SSR-based Magnaporthe oryzae physical map to locate avirulence gene AvrPi12
Marker a | Type b | Primer sequence (5′ → 3′) c | Genomic position (bp) d | Tm (°C) e | Size (bp) f |
---|---|---|---|---|---|
SM6–12 | SSR | F: CGTATTCTTGGCTGAGTGGC | 6: 3283269 | 60 | 293 |
R: GCCGACGACCTGTGTGATAC | Â | ||||
LSM6–2 | InDel | F: GCGAGAGTTTGACTGATGTTTG | 6: 3857026 | 60 | 86 |
R: ATCCACCCAAGCTTTCGTTTTAG | Â | ||||
SM6–16 | SSR | F:TGATACTAACTCCTCCTCCCAAAAC | 6: 3826452 | 57 | 159 |
R: CAGTCACGGTCTCCTAAGCC | Â | ||||
LSM6–4 | InDel | F: GCAGTAGGTGAATTGTCTCGGT | 6: 3932760 | 58 | 124 |
R: AGTCACCCCTACTCTGTTGTTGT | Â | ||||
LSM6–6 | SNP | F: ACCGAGTTTAGTGTTTTGGATGA | 6: 4011510 | 58 | 165 |
R: TCGAAGGTTTATGGTGCCAAT | Â | ||||
LSM6–9 | SNP | F: CCACCCTGTGTCGTACTTCAATT | 6: 4040268 | 58 | 112 |
R: AAGATTGGTGGCCTGTCGTT | Â | ||||
LSM6–1 | InDel | F: ATACCAGAACAAATTGCAAACAGC | 6: 4065773 | 60 | 46 |
R: GTTACACCGAGGAACTTGCTTG | Â | ||||
SM6–17 | SSR | F: GGCGGCAAGTCGCTGAAGG | 6: 4086125 | 58 | 330 |
R: GAGTTTGAGACCTTGCGATT | Â | ||||
LSM6–5 | SSR | F: GAGACGATGGGCCTCTAGCA | 6: 4096513 | 59 | 143 |
R: CTCCACGACGGTATGTTTGC | Â |