Fig. 4From: A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome a Principal Coordinates Analysis PCoA (Unweighted UniFrac) plots of data generated by the three different platforms, analyzed by different bioinformatics pipelines and colored according to treatment group (Prebiotics, control and Salmonella-vaccinated). PERMANOVA F and P values and ANOSIM R and P values are indicated. b Procrustes analysis of sequencing data from the different platforms analyzed with the QIIME2 (de novo OTU picking plus chimera depletion). M and P values are indicated in the figureBack to article page