Towards diagnostic metagenomics of Campylobacter in fecal samples

BMC Microbiology

Table 2 Data analysis of clinical samples

Infection load (CFU/ml)	Kraken raw	Kraken final	CLARK raw	CLARK final	Host contamination %
9.2 × 10⁴	757	10	155	81	0.72
5.0 × 10⁶	1940	295	932	159	1.26
2.2 × 10⁷	5129	848	5034	3126	0.10
2.6 × 10⁷	3917	565	3667	2170	0.27
1.0 × 10⁸	3286	362	3122	2048	0.18
2.0 × 10⁸	42,412	20	5625	4146	37.59
4.6 × 10⁸	13,288	2609	13,141	9787	0.12
1.0 × 10⁹	199,512	3439	199,219	14,872	0.15

ISSN: 1471-2180