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Table 2 RPKM and differential expression parameters for the 25 genes with the highest differential expression between both conditions

From: Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment

Gene

RPKM I

RPKM E

log2FC

p-value

Observations

Genes upregulated in isolation condition

 VP1512

1104

29

5.7

5.0E−83

Hypothetical protein

 VP1513

392

11

5.6

1.1E−89

Formate dehydrogenase large subunit

 VP1514

357

10

5.5

1.9E−79

Formate dehydrogenase, iron-sulfur subunit. Interaction with 4Fe-4S

 VP1515

216

5

5.9

1.6E- 141

Formate dehydrogenase, cytochrome b556 subunit. Membrane protein

 VP1516

671

16

5.9

8.2E- 219

Hypothetical protein

 VPA1634

2140

8

8.5

0

Putrescine transporter

 VPA1635

3652

16

8.4

0

Ornithine decarboxylase, initial enzyme in polyamine synthesis

 VPA0040

679

9

6.7

1.5E- 289

Hypothetical protein

 VP0061

330

7

6.0

4.1E- 130

Multidrug transmembrane resistance signal peptide protein

 VPA0475

1764

5

8.8

6.1E- 228

Hypothetical protein

Genes downregulated in isolation condition

 VP1393

19

4134

−7.2

0

BfdA, Hcp1

 VP1777

0

14

-7.1

4.1E−24

Aldehyde dehydrogenase Oxidation of acetaldehyde NAD or NADP reduction

 VP1783

0

51

-7.7

3.1E−29

Hypothetical protein

 VP1794

0

29

-7.5

6.6E−23

Hypothetical protein

 VP1796

0

21

-7.2

4.7E−25

Hypothetical protein

 VP1067

0

10

-7.1

6.6E−20

Hypothetical protein

 VP1068

1

178

-7.0

9.0E- 114

Hypothetical protein

 VP1400

1

207

-7.5

3.5E- 248

Hypothetical protein

 VP1072

1

142

-7.2

1.1E- 186

Helicase

 VPA1424

2

492

−7.2

0

Fructose transport