Gene | RPKM I | RPKM E | log2FC | p-value | Observations |
---|---|---|---|---|---|
Upregulated genes in isolation condition | |||||
svpa172.1 | 157,710 | 37,082 | 2.7 | 7.2E−31 | Carbon storage regulator (CsrB) |
svpa2439.1 | 121,815 | 43,795 | 2.1 | 2.2E−51 | CsrB |
svpa3216.1 | 128,785 | 50,025 | 1.9 | 7.3E−20 | CsrB |
svpa2734.1 | 429,216 | 166,980 | 2.3 | 1.6E−25 | 6S RNA |
VPt061 | 4867 | 1639 | 2.1 | 2.0E−16 | Arginine tRNA |
VPt108 | 7708 | 2916 | 2.0 | 6.3E−28 | Ileucine tRNA |
VPA1289 | 20,530 | 1102 | 4.8 | 4.8E−151 | CspA |
VPA1476 | 4431 | 277 | 4.6 | 5.4E−106 | Hypothetical protein |
VPA1475 | 3828 | 531 | 3.4 | 2.3E−46 | Purine nucleoside phosphorylase DeoD-type 2 |
VP0129 | 4086 | 613 | 3.3 | 2.0E−68 | Phosphoenolpyruvate carboxykinase |
VPA0552 | 55,155 | 9280 | 3.1 | 1.7E−85 | Cold shock DNA-binding domain protein |
VP2585 | 37,016 | 9182 | 2.6 | 2.2E−53 | Hypothetical protein |
VP0256 | 4022 | 1260 | 2.2 | 1.4E−40 | 30S ribosomal protein S10 |
VPA0466 | 7349 | 2418 | 2.2 | 8.1E−71 | Universal stress protein A (Usp) |
VPA1428 | 3936 | 1310 | 2.2 | 6.6E−42 | Azurin: blue copper protein |
VP0076 | 5271 | 2400 | 1.7 | 7.6E−19 | Usp |
VPA1469 | 22,981 | 10,708 | 1.7 | 3.4E−26 | Outer membrane protein (OMP) |
Downregulated in isolation condition | |||||
svpa113.1 | 2014 | 24,669 | -3.0 | 2.7E−66 | RyhB |
VP1393 | 19 | 4134 | -7.2 | 0 | BfdA, Hcp1 |
VP0795 | 1150 | 11,616 | -2.7 | 1.2E−116 | Histidine-containing phosphocarrier protein |
VP2157 | 1169 | 8519 | -2.3 | 2.6E−27 | Glyceraldehyde-3-phosphate dehydrogenase |