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Table 1 Differentially expressed genes among the 50 more highly expressed in both growth conditions

From: Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment

Gene

RPKM I

RPKM E

log2FC

p-value

Observations

Upregulated genes in isolation condition

 svpa172.1

157,710

37,082

2.7

7.2E−31

Carbon storage regulator (CsrB)

 svpa2439.1

121,815

43,795

2.1

2.2E−51

CsrB

 svpa3216.1

128,785

50,025

1.9

7.3E−20

CsrB

 svpa2734.1

429,216

166,980

2.3

1.6E−25

6S RNA

 VPt061

4867

1639

2.1

2.0E−16

Arginine tRNA

 VPt108

7708

2916

2.0

6.3E−28

Ileucine tRNA

 VPA1289

20,530

1102

4.8

4.8E−151

CspA

 VPA1476

4431

277

4.6

5.4E−106

Hypothetical protein

 VPA1475

3828

531

3.4

2.3E−46

Purine nucleoside phosphorylase DeoD-type 2

 VP0129

4086

613

3.3

2.0E−68

Phosphoenolpyruvate carboxykinase

 VPA0552

55,155

9280

3.1

1.7E−85

Cold shock DNA-binding domain protein

 VP2585

37,016

9182

2.6

2.2E−53

Hypothetical protein

 VP0256

4022

1260

2.2

1.4E−40

30S ribosomal protein S10

 VPA0466

7349

2418

2.2

8.1E−71

Universal stress protein A (Usp)

 VPA1428

3936

1310

2.2

6.6E−42

Azurin: blue copper protein

 VP0076

5271

2400

1.7

7.6E−19

Usp

 VPA1469

22,981

10,708

1.7

3.4E−26

Outer membrane protein (OMP)

Downregulated in isolation condition

 svpa113.1

2014

24,669

-3.0

2.7E−66

RyhB

 VP1393

19

4134

-7.2

0

BfdA, Hcp1

 VP0795

1150

11,616

-2.7

1.2E−116

Histidine-containing phosphocarrier protein

 VP2157

1169

8519

-2.3

2.6E−27

Glyceraldehyde-3-phosphate dehydrogenase