Skip to main content
Fig. 5 | BMC Microbiology

Fig. 5

From: Selection and characterization of alanine racemase inhibitors against Aeromonas hydrophila

Fig. 5

The molecular docking of Alr-2 with inhibitors. The 3D structure of homogentisic acid, hydroquinone and PLP was constructed using Corina online demonstration. The 3D structure of homogentisic acid (a), hydroquinone (b) and PLP (c) is shown. d Docking solution of homogentisic acid in the catalytic domain of Alr-2. e Docking solution of hydroquinone in the catalytic domain of Alr-2. The protein backbone of Alr-2 is shown with PLP interaction in the alpha model. f The 2D representation of homogentisic acid and its interaction with Alr-2 was analyzed using LIGPLOT. g The 2D representation of hydroquinone and its interaction with Alr-2 was analyzed using LIGPLOT. h The 2D representation of PLP and its interaction with Alr-2 was analyzed using LIGPLOT. NOTE: A H-bond is represented as a dashed line, and a spiked residue represents hydrophobic contacts

Back to article page