Species not represented in the in-house reference database | TOTAL (n = 12) | Collection strains BCCM/IHEM | Clinical strains (Marseille Hospital) | Species represented once or twice in the in-house reference database | TOTAL (n = 130) | Collection strains BCCM/IHEM | Clinical strains (Marseille Hospital) | Species represented three or more times in the in-house reference database | TOTAL (n = 280) | Collection strains BCCM/IHEM | Clinical strains (Marseille Hospital) |
---|---|---|---|---|---|---|---|---|---|---|---|
Cladosporium bruhnei | 1 | 1 | 0 | Acremonium breve | 1 | 0 | 1 | Alternaria alternata | 2 | 1 | 1 |
Cladosporium halotolerans | 2 | 2 | 0 | Acremonium strictum | 6 | 6 | 0 | Aspergillus alabamensis | 4 | 0 | 4 |
Colletotrichum lineola | 1 | 1 | 0 | Alternaria infectoria | 2 | 1 | 1 | Aspergillus caesiellus | 1 | 1 | 0 |
Trichoderma orientale | 1 | 1 | 0 | Arthrinium arundinis | 1 | 0 | 1 | Aspergillus calidoustus | 10 | 2 | 8 |
Mucor hiemalis | 1 | 1 | 0 | Aspergillus dimorphicus | 1 | 0 | 1 | Aspergillus carbonarius | 1 | 0 | 1 |
Penicillium atramentosum | 1 | 1 | 0 | Aspergillus fischeri | 2 | 0 | 2 | Aspergillus carneus | 1 | 0 | 1 |
Penicillium concentricum | 1 | 1 | 0 | Aspergillus flavipes | 3 | 2 | 1 | Aspergillus chevalieri | 4 | 2 | 2 |
Phaeosphaeria avenaria | 1 | 1 | 0 | Aspergillus floccosus | 3 | 0 | 3 | Aspergillus clavatus | 2 | 2 | 0 |
Pleospora papaveracea | 1 | 1 | 0 | Aspergillus fumigatiaffinis | 2 | 0 | 2 | Aspergillus creber | 1 | 1 | 0 |
Trichoderma reesei | 2 | 2 | 0 | Aspergillus iizukae | 1 | 0 | 1 | Aspergillus flavus | 15 | 5 | 10 |
Aspergillus quadrilineatus | 1 | 0 | 1 | Aspergillus fumigatus | 20 | 4 | 16 | ||||
Aspergillus ruber | 2 | 2 | 0 | Aspergillus hiratsukae | 1 | 0 | 1 | ||||
Aspergillus sclerotiorum | 3 | 1 | 2 | Aspergillus hollandicus | 5 | 4 | 1 | ||||
Aspergillus subolivaceus | 1 | 0 | 1 | Aspergillus insuetus | 1 | 0 | 1 | ||||
Aspergillus unguis | 4 | 4 | 0 | Aspergillus nidulans | 8 | 4 | 4 | ||||
Aureobasidium pullulans | 3 | 2 | 1 | Aspergillus niger | 4 | 2 | 2 | ||||
Cladosporium cladosporioides | 1 | 1 | 0 | Aspergillus nomius | 1 | 0 | 1 | ||||
Cladosporium pseudocladosporioides | 2 | 2 | 0 | Aspergillus parasiticus | 2 | 1 | 1 | ||||
Cladosporium sphaerospermum | 1 | 1 | 0 | Aspergillus sydowii | 6 | 2 | 4 | ||||
Cochliobolus hawaiiensis | 2 | 0 | 2 | Aspergillus tamarii | 2 | 2 | 0 | ||||
Curvularia lunata | 2 | 2 | 0 | Aspergillus terreus | 10 | 3 | 7 | ||||
Fusarium dimerum | 2 | 1 | 1 | Aspergillus tubingensis | 29 | 1 | 28 | ||||
Geosmithia argillacea | 1 | 0 | 1 | Aspergillus versicolor | 3 | 2 | 1 | ||||
Geosmithia pallida | 1 | 1 | 0 | Aspergillus westerdijkiae | 1 | 0 | 1 | ||||
Hexagonia hydnoides | 1 | 0 | 1 | Beauveria bassiana | 3 | 2 | 1 | ||||
Lecytophophora sp. | 1 | 1 | 0 | Epicoccum nigrum | 2 | 2 | 0 | ||||
Macrophomina phaseolina | 1 | 0 | 1 | Exophiala dermatitidis | 2 | 2 | 0 | ||||
Mucor circinelloides | 5 | 5 | 0 | Fomitopsis pinicola | 2 | 0 | 2 | ||||
Penicillium asturianum | 1 | 0 | 1 | Fusarium equiseti | 1 | 0 | 1 | ||||
Penicillium brasilianum | 3 | 1 | 2 | Fusarium oxysporum | 21 | 15 | 6 | ||||
Penicillium cecidicola | 2 | 1 | 1 | Fusarium proliferatum | 10 | 1 | 9 | ||||
Penicillium citrinum | 5 | 4 | 1 | Fusarium sacchari | 1 | 0 | 1 | ||||
Penicillium corylophilum | 4 | 2 | 2 | Fusarium solani | 7 | 6 | 1 | ||||
Penicillium crateriforme | 2 | 1 | 1 | Fusarium verticillioides | 1 | 1 | 0 | ||||
Penicillium diversum | 1 | 1 | 0 | Galactomyces geotrichum | 2 | 2 | 0 | ||||
Penicillium expansum | 2 | 2 | 0 | Lichtheimia corymbifera | 2 | 2 | 0 | ||||
Penicillium funiculosum | 2 | 0 | 2 | Microsporum audouinii | 1 | 0 | 1 | ||||
Penicillium glabrum | 9 | 3 | 6 | Microsporum canis | 2 | 0 | 2 | ||||
Penicillium helicum | 1 | 0 | 1 | Purpureocillium lilacinus | 3 | 2 | 1 | ||||
Talaromyces marneffei | 1 | 0 | 1 | Paecilomyces variotii | 3 | 2 | 1 | ||||
Penicillium nalgiovense | 1 | 0 | 1 | Penicillium chrysogenum | 27 | 13 | 14 | ||||
Penicillium oxalicum | 1 | 1 | 0 | Penicillium crustosum | 3 | 2 | 1 | ||||
Penicillium pinophilum | 3 | 0 | 3 | Penicillium griseofulvum | 1 | 1 | 0 | ||||
Penicillium polonicum | 6 | 6 | 0 | Rhizomucor pusillus | 2 | 2 | 0 | ||||
Penicillium purpurogenum | 1 | 0 | 1 | Rhizopus oryzae | 6 | 5 | 1 | ||||
Penicillium raistrickii | 1 | 1 | 0 | Scedosporium apiospermum | 11 | 2 | 9 | ||||
Penicillium rolfsii | 1 | 0 | 1 | Scedosporium prolificans | 3 | 2 | 1 | ||||
Penicillium rugulosum | 1 | 1 | 0 | Schizophyllum commune | 4 | 1 | 3 | ||||
Penicillium sizovae | 2 | 0 | 2 | Scopulariopsis brevicaulis | 15 | 13 | 2 | ||||
Penicillium spinulosum | 2 | 0 | 2 | Trichoderma longibrachiatum | 2 | 2 | 0 | ||||
Penicillium terrigenum | 1 | 0 | 1 | Trichophyton interdigitale | 1 | 0 | 1 | ||||
Penicillium variabile | 2 | 0 | 2 | Trichophyton rubrum | 8 | 0 | 8 | ||||
Phanerochaete chrysosporium | 2 | 0 | 2 | ||||||||
Pithomyces chartarum | 3 | 3 | 0 | ||||||||
Pseudallescheria boydii | 1 | 0 | 1 | ||||||||
Pseudallescheria ellipsoidea | 1 | 1 | 0 | ||||||||
Rhizomucor variabilis | 2 | 0 | 2 | ||||||||
Rhizopus microsporus | 1 | 1 | 0 | ||||||||
Scedosporium aurantiacum | 6 | 6 | 0 | ||||||||
Tyromyces fissilis | 3 | 0 | 3 |