Skip to main content

Table 1 Panel description obtained after DNA sequencing of the strains and representation of the entire set of species in the in-house reference spectrum database

From: Decision criteria for MALDI-TOF MS-based identification of filamentous fungi using commercial and in-house reference databases

Species not represented in the in-house reference database

TOTAL (n = 12)

Collection strains BCCM/IHEM

Clinical strains (Marseille Hospital)

Species represented once or twice in the in-house reference database

TOTAL (n = 130)

Collection strains BCCM/IHEM

Clinical strains (Marseille Hospital)

Species represented three or more times in the in-house reference database

TOTAL (n = 280)

Collection strains BCCM/IHEM

Clinical strains (Marseille Hospital)

Cladosporium bruhnei

1

1

0

Acremonium breve

1

0

1

Alternaria alternata

2

1

1

Cladosporium halotolerans

2

2

0

Acremonium strictum

6

6

0

Aspergillus alabamensis

4

0

4

Colletotrichum lineola

1

1

0

Alternaria infectoria

2

1

1

Aspergillus caesiellus

1

1

0

Trichoderma orientale

1

1

0

Arthrinium arundinis

1

0

1

Aspergillus calidoustus

10

2

8

Mucor hiemalis

1

1

0

Aspergillus dimorphicus

1

0

1

Aspergillus carbonarius

1

0

1

Penicillium atramentosum

1

1

0

Aspergillus fischeri

2

0

2

Aspergillus carneus

1

0

1

Penicillium concentricum

1

1

0

Aspergillus flavipes

3

2

1

Aspergillus chevalieri

4

2

2

Phaeosphaeria avenaria

1

1

0

Aspergillus floccosus

3

0

3

Aspergillus clavatus

2

2

0

Pleospora papaveracea

1

1

0

Aspergillus fumigatiaffinis

2

0

2

Aspergillus creber

1

1

0

Trichoderma reesei

2

2

0

Aspergillus iizukae

1

0

1

Aspergillus flavus

15

5

10

    

Aspergillus quadrilineatus

1

0

1

Aspergillus fumigatus

20

4

16

    

Aspergillus ruber

2

2

0

Aspergillus hiratsukae

1

0

1

    

Aspergillus sclerotiorum

3

1

2

Aspergillus hollandicus

5

4

1

    

Aspergillus subolivaceus

1

0

1

Aspergillus insuetus

1

0

1

    

Aspergillus unguis

4

4

0

Aspergillus nidulans

8

4

4

    

Aureobasidium pullulans

3

2

1

Aspergillus niger

4

2

2

    

Cladosporium cladosporioides

1

1

0

Aspergillus nomius

1

0

1

    

Cladosporium pseudocladosporioides

2

2

0

Aspergillus parasiticus

2

1

1

    

Cladosporium sphaerospermum

1

1

0

Aspergillus sydowii

6

2

4

    

Cochliobolus hawaiiensis

2

0

2

Aspergillus tamarii

2

2

0

    

Curvularia lunata

2

2

0

Aspergillus terreus

10

3

7

    

Fusarium dimerum

2

1

1

Aspergillus tubingensis

29

1

28

    

Geosmithia argillacea

1

0

1

Aspergillus versicolor

3

2

1

    

Geosmithia pallida

1

1

0

Aspergillus westerdijkiae

1

0

1

    

Hexagonia hydnoides

1

0

1

Beauveria bassiana

3

2

1

    

Lecytophophora sp.

1

1

0

Epicoccum nigrum

2

2

0

    

Macrophomina phaseolina

1

0

1

Exophiala dermatitidis

2

2

0

    

Mucor circinelloides

5

5

0

Fomitopsis pinicola

2

0

2

    

Penicillium asturianum

1

0

1

Fusarium equiseti

1

0

1

    

Penicillium brasilianum

3

1

2

Fusarium oxysporum

21

15

6

    

Penicillium cecidicola

2

1

1

Fusarium proliferatum

10

1

9

    

Penicillium citrinum

5

4

1

Fusarium sacchari

1

0

1

    

Penicillium corylophilum

4

2

2

Fusarium solani

7

6

1

    

Penicillium crateriforme

2

1

1

Fusarium verticillioides

1

1

0

    

Penicillium diversum

1

1

0

Galactomyces geotrichum

2

2

0

    

Penicillium expansum

2

2

0

Lichtheimia corymbifera

2

2

0

    

Penicillium funiculosum

2

0

2

Microsporum audouinii

1

0

1

    

Penicillium glabrum

9

3

6

Microsporum canis

2

0

2

    

Penicillium helicum

1

0

1

Purpureocillium lilacinus

3

2

1

    

Talaromyces marneffei

1

0

1

Paecilomyces variotii

3

2

1

    

Penicillium nalgiovense

1

0

1

Penicillium chrysogenum

27

13

14

    

Penicillium oxalicum

1

1

0

Penicillium crustosum

3

2

1

    

Penicillium pinophilum

3

0

3

Penicillium griseofulvum

1

1

0

    

Penicillium polonicum

6

6

0

Rhizomucor pusillus

2

2

0

    

Penicillium purpurogenum

1

0

1

Rhizopus oryzae

6

5

1

    

Penicillium raistrickii

1

1

0

Scedosporium apiospermum

11

2

9

    

Penicillium rolfsii

1

0

1

Scedosporium prolificans

3

2

1

    

Penicillium rugulosum

1

1

0

Schizophyllum commune

4

1

3

    

Penicillium sizovae

2

0

2

Scopulariopsis brevicaulis

15

13

2

    

Penicillium spinulosum

2

0

2

Trichoderma longibrachiatum

2

2

0

    

Penicillium terrigenum

1

0

1

Trichophyton interdigitale

1

0

1

    

Penicillium variabile

2

0

2

Trichophyton rubrum

8

0

8

    

Phanerochaete chrysosporium

2

0

2

    
    

Pithomyces chartarum

3

3

0

    
    

Pseudallescheria boydii

1

0

1

    
    

Pseudallescheria ellipsoidea

1

1

0

    
    

Rhizomucor variabilis

2

0

2

    
    

Rhizopus microsporus

1

1

0

    
    

Scedosporium aurantiacum

6

6

0

    
    

Tyromyces fissilis

3

0

3