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Fig. 5 | BMC Microbiology

Fig. 5

From: RsmW, Pseudomonas aeruginosa small non-coding RsmA-binding RNA upregulated in biofilm versus planktonic growth conditions

Fig. 5

RsmA specifically binds to RsmW with high affinity. Electrophoresis mobility shift assay between RsmA and RsmW was carried out by synthesizing RsmW in vitro with T7 RNA polymerase. The fluorescently labeled RsmW (0.05 pmol in a final volume of 10 μl) was incubated in the absence (a, lane 1; b, lane 1) or presence of increasing concentrations of RsmA (a, lanes 2-7; b lanes 2-8), and in the presence of unlabeled specific competitor RNA, RsmW (5 pmol) (a, lane 7) or unlabeled competitor RNA, RsmY (5 pmol) (b, lane 8). From these results the dissociation constant (Kd) between RsmA and RsmW was determined to be 11.5± 1.5nM

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