From: The recombination dynamics of Staphylococcus aureus inferred from spA gene
 | spA | MLST |
---|---|---|
Sequence, n | 38 | 38 |
Sequence length, L | 1575 | 3186 |
Haplotypes, h | 21 | 19 |
Haplotype diversity, Hd (standard deviation) | 0.939 | 0.926 |
(0.025) | (0.022) | |
Nucleotide diversity, π (standard deviation) | 0.0370 | 0.0110 |
(0.0044) | (0.0043) | |
Polymorphic sites, S (%) | 191 (12.13) | 381 (11.96) |
θ (from S) (standard deviation) | 0.03779 | 0.02796 |
(0.01126) | (0.00143) | |
Pairwise differences, k | 44.570 | 35.090 |
Total number of mutations, η | 184 | 286 |
Synonymous mutations (%) | 133 (72.28) | 297 (76.74) |
Non-synonymous mutations (%) | 51 (27.72) | 90 (23.26) |
dN/dS | 0.1348 | 0.0970 |
D (Tajima) | −0.40 (p > 0.1) | - |
D* | −1.34 (p > 0.1) | - |
F* | −1.12 (p > 0.1) | - |