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Table 5 Genome sequences of Vibrio strains used in this studya

From: Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics

Strain

Reference sequenceb

Genome size (Mb)

Number of genes used in this study (on ffn file)

Release Date

Status of genome project

V. parahaemolyticus RIMD 2210633

NC_004603.1, NC_004605.1

5.17

4832

2003/03/05

Completed

V. cholerae O1 biovar EI Tor str. N16961

NC_002505.1, NC_002506.1

4.03

3834

2000/06/14

Completed

V. cholerae M66

NC_012578.1, NC_012580.1

3.94

3693

2009/04/20

Completed

V. cholerae MJ 1236

NC_012667.1, NC_012668.1

4.24

3772

2009/05/04

Completed

V. cholerae O395

NC_009456.1, NC_009457.1

4.13

3998

2007/05/08

Completed

V. vulnificus CMCP6

NC_004459.3, NC_004460.2

5.13

4433

2002/12/22

Completed

V. vulnificus MO6 24 O

NC_014966.1, NC_014965.1

5.01

4562

2011/01/24

Completed

V. vulnificus YJ016

NC_005140.1, NC_005139.1

5.26

5023

2003/10/01

Completed

V. fischeri MJ11

NC_011184.1, NC_011186.1

4.5

4039

2008/08/28

Completed

V. fischeri ES114

NC_006841.2, NC_006840.2

4.27

3817

2005/02/11

Completed

V. anguillarum 775

NC_015637.1, NC_015633.1

4.05

3732

2011/06/09

Completed

V. species Ex25

NC_013456.1, NC_013457.1

5.09

4518

2009/11/03

Completed

V. harveyi ATCC BAA-1116

NC_009783.1, NC_009784.1

6.06

6041

2007/08/28

Completed

V. splendidus LGP32

NC_011753.2, NC_011744.2

4.97

4432

2008/12/17

Completed

V. alginolyticus 12G01

NZ_CH902589 ~ NZ_CH902598c

5.16

 

2006/04/06

Scaffolds

V. mimicus MB-451

NZ_ADAF01000001 ~ NZ_ADAF01000003C

4.31

 

2009/10/23

Scaffolds

  1. aThe information in this table was updated in June 2012. Fourteen genome shotgun sequences of Vibrio strains are not listed in this table
  2. bCompleted genome sequences were obtained from genomes on the NCBI site (ftp://ftp.ncbi.nlm.nih.gov/genomes/) in December 2011
  3. cThe genome sequences of V. alginolyticus and V. mimicus were not completed. Scaffolds sequence data were obtained from the NCBI site and used for comparative genomics in this study