Fig. 3
From: Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients
Phylogenetic tree based on core-genome alignment of different Pseudomonas aeruginosa strains. Genomes of the earliest isolate(s) of each of the lineages IT01-IT06 were aligned against a panel of 60 genome sequences of other strains of P. aeruginosa. a Tree showing the phylogeny of all isolates. b Subset of tree showing phylogeny of all isolates, except the outlier isolate PA7. Strains are either named after their lineage (IT01-IT06 or DK01-DK53) followed by the name of the specific isolate in parenthesis, or by the name of the reference strains (strains with completed genome sequences) followed by ‘ref’ in parenthesis. Phylogenetic tree was constructed using Harvest [28]