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Table 2 Single nucleotide polymorphisms (SNPs) in F. psychrophilum strains used in our experiments

From: Potential mechanisms of attenuation for rifampicin-passaged strains of Flavobacterium psychrophilum

  

NONSYNONYMOUS SNPs

SYNONYMOUS SNPs

 

CW

CN

CR

TW

TN

TR

ERGO

B17

CW

n.a.

5

8

85

113

123

19

14

CN

32

n.a.

3

105

141

117

25

N.D.

CR

34

33

n.a.

113

158

108

28

N.D.

TW

161

170

174

n.a.

126

174

100

N.D.

TN

233

142

146

177

n.a.

48

102

N.D.

TR

278

287

291

257

180

n.a.

132

N.D.

ERGO

37

75

78

206

208

238

n.a.

33

B17

45

N.D.

N.D.

N.D.

N.D.

N.D.

50

n.a.

  1. CW wild type CSF 259–93, CN CSF 259–93 passaged without Rif, CR CSF 259–93 passaged with Rif, TW wild type THC 02–90, TN THC 02–90 passaged without Rif, THC 02–90 passaged with Rif, B17 – CSF 259-93B.17
  2. N.D. not determined due to these genomes being sequenced at different times and by different methods
  3. n.a. = not applicable
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BMC Microbiology

ISSN: 1471-2180

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