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Fig. 7 | BMC Microbiology

Fig. 7

From: Representing virus-host interactions and other multi-organism processes in the Gene Ontology

Fig. 7

The breakdown of multi-organism process annotations into manual and electronically-derived methods. Counts exclude ‘multi-multicellular organism process’ (GO:0044706) and ‘multi-organism reproductive process’ (GO:0044703). Manual experimental annotations include annotations with evidence codes IMP, IGI, IPI, IDA, IEP and EXP. Manual non-experimental annotations include annotations with evidence codes ISS, TAS, NAS, ND, IC, RCA, IBA, IBD, IKR, IRD, ISA, ISM, ISO and IGC. Annotations with an IEA (inferred from electronic annotation) code are further broken-down into mapping methods for UniProtKB Keywords-to-GO (UniProtKW2GO), InterPro2GO, and HAMAP2GO. Refer to the text for details of the InterPro2GO and UniProtKB Keywords2GO mapping methods. For HAMAP2GO mappings, GO terms are manually assigned to each HAMAP (High-quality Automated and Manual Annotation of microbial Proteins) family rule, and transferred between highly orthologous microbial proteins. Further IEA methods are not shown for conciseness. Reactome mappings receive a TAS (traceable author statement) evidence code, and are therefore included in the manual non-experimental annotation count. Annotation counts are given for UniProtKB/Swiss-Prot identifiers which provide a non-redundant source of protein sequences, and were recorded on October 8th 2014

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