Locus | Repeat length (bp) | Reference strain (location) | Primer sequence (3’ → 5’) | Smallest product (bp) | Largest product (bp) | Gene |
---|---|---|---|---|---|---|
STTR3 | 27/33 | LT2 (3629458) | STTR3-F:NED-ccccctaagcccgataatgg | 464 | 530 | bigA |
STTR3-R: tgacgccgttgctgaaggtaataa | ||||||
STTR5 | 6 | LT2 (3184543) | STTR5-F:NED-atggcgaggcgagcagcagt | 228 | 300 | yohM |
STTR5-R:ggtcaggccgaatagcaggat | ||||||
STTR6 | 9 | LT2 (2730867) | STTR6-F:6FAM-tcgggcatgcgttgaaa | 283 | 397 | Prophage related |
STTR6-R: ctggtggggagaatgactgg | ||||||
STTR9 | 9 | LT2 (3246672) | STTR9-F:6FAMagaggcgctgcgattgacgata | 163 | 181 | Intergenic |
STTR9-R: cattttccacagcggcagtttttc | ||||||
STTR10p | 6 | pSLT (53711) | STTR10-F: PETcgggcgcggctggagtatttg | 358 | 496 | In plasmid |
STTR10-R: gaaggggccgggcagagacagc |