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Table 1 Characteristics of each MLVA loci for S. Typhimurium

From: Characterization of Salmonella Typhimurium isolates from domestically acquired infections in Finland by phage typing, antimicrobial susceptibility testing, PFGE and MLVA

Locus

Repeat length (bp)

Reference strain (location)

Primer sequence (3’ → 5’)

Smallest product (bp)

Largest product (bp)

Gene

STTR3

27/33

LT2 (3629458)

STTR3-F:NED-ccccctaagcccgataatgg

464

530

bigA

STTR3-R: tgacgccgttgctgaaggtaataa

STTR5

6

LT2 (3184543)

STTR5-F:NED-atggcgaggcgagcagcagt

228

300

yohM

STTR5-R:ggtcaggccgaatagcaggat

STTR6

9

LT2 (2730867)

STTR6-F:6FAM-tcgggcatgcgttgaaa

283

397

Prophage related

STTR6-R: ctggtggggagaatgactgg

STTR9

9

LT2 (3246672)

STTR9-F:6FAMagaggcgctgcgattgacgata

163

181

Intergenic

STTR9-R: cattttccacagcggcagtttttc

STTR10p

6

pSLT (53711)

STTR10-F: PETcgggcgcggctggagtatttg

358

496

In plasmid

STTR10-R: gaaggggccgggcagagacagc